ELKI command line parameter overview:

Kernel function to use.

Number of top outliers to compute.

Parameter for:

Frequency of zeros in the projection matrix.

Default: 3.0

Parameter for:

Similarity function to derive the distance between database objects from.

Algorithm to run.

Distance function to determine the distance between database objects.

Number of stable iterations for convergence.

Default: 15

Parameter for:

Distance function to use.

Similarity matrix initialization..

Dampening factor lambda. Usually 0.5 to 1.

Default: 0.5

Parameter for:

Maximum number of iterations.

Default: 1000

Parameter for:

Quantile to use for diagonal entries.

Default: 0.5

Parameter for:

Similarity function to use.

Pattern to recognize class label attributes.

Default: (Class|Class-?Label)

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Pattern to recognize external ID attributes.

Default: (External-?ID)

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Include the query object in the evaluation.

Default: false

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K to compute the average precision at.

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Relative amount of object to sample.

Parameter for:

Random seed for deterministic sampling.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Scale the data space extension by the given factor.

Default: 1.0

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Subspace dimensionality to search for.

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Population size for evolutionary algorithm.

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The number of equi-depth grid ranges to use in each dimension.

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The random number generator seed.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Alpha parameter to control the shape of the output distribution.

Default: 0.1

Parameter for:

A list of the distribution estimators to try.

KMeans variant

Half-transparent filling of bubbles.

Default: false

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Additional scaling function for bubbles.

Bundle file to load the data from.

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Flag to indicate that only subspaces with large coverage (i.e. the fraction of the database that is covered by the dense units) are selected, the rest will be pruned.

Default: false

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Pattern to recognize noise classes by their label.

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Pattern to recognize noise models by their label.

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The random generator seed.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Pattern to specify clusters to reassign.

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Factor for scaling the specified cluster sizes.

Default: 1.0

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The generator specification file.

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Distance function to use for computing the c-index.

Control how noise should be treated.

Default: TREAT_NOISE_AS_SINGLETONS

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Inclusion threshold for canopy clustering. t1 >= t2!

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Removal threshold for canopy clustering. t1 >= t2!

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Flag to indicate that an adjustment of the applied heuristic for choosing an interval is performed after an interval is selected.

Default: false

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The maximum jitter for distance values.

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The maximum level for splitting the hypercube.

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The minimum dimensionality of the subspaces to be found.

Default: 1

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Threshold for minimum number of points in a cluster.

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Parameter for multiple node deletion to accelerate the algorithm.

Default: 1.0

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Threshold value to determine the maximal acceptable score (mean squared residue) of a bicluster.

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The number of biclusters to be found.

Default: 1

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Distribution of replacement values when masking found clusters.

Random generator seed.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Number of samples (iterations) to run.

Default: 5

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The size of the sample.

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Class label to use for negative instances.

Default: negative

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Regular expression to identify positive objects.

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Class label to use for positive instances.

Default: positive

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Maximum value to allow.

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Minimum value to allow.

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Flag to indicate that only subspaces with large coverage (i.e. the fraction of the database that is covered by the dense units) are selected, the rest will be pruned.

Default: false

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The density threshold for the selectivity of a unit, where the selectivity isthe fraction of total feature vectors contained in this unit.

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The number of intervals (units) in each dimension.

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Parameter to override the clustering label, mostly to give a more descriptive label.

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Output file name. When not given, the result will be written to stdout.

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Always append to the output file.

Default: false

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The number of neighbors (not including the query object) to use for computing the COF score.

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number of bins

Default: 50

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Class label for the 'positive' class.

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Class label for the 'positive' class.

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Class to use as scaling function.

Class to use as scaling function.

Distance function to use for measuring concordant and discordant pairs.

The assumed distribution of squared distances. ChiSquared is faster, Gamma expected to be more accurate but could also overfit.

Default: GAMMA

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Expected share of outliers. Only affect score normalization.

Default: 0.001

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The number of nearest neighbors of an object to be considered for computing its COP_SCORE.

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The number of nearest neighbors of an object to be considered for computing its COP_SCORE.

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Include COP models (error vectors) in output. This needs more memory.

Default: false

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The class to compute (filtered) PCA.

The class to compute (filtered) PCA.

Number of neighbors to use for PCA.

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Phi parameter, expected rate of outliers. Set to 0 to use raw CDF values.

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Distance function to determine the distance between objects.

Expansion rate of the tree (Default: 1.3).

Default: 1.3

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Truncate tree when branches have less than this number of instances.

Default: 10

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Distance function to use for computing the davies-bouldin index.

option, how noise should be treated.

Default: TREAT_NOISE_AS_SINGLETONS

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Control how noise should be treated.

Default: TREAT_NOISE_AS_SINGLETONS

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Database class.

Database indexes to add.

Database connection class.

Class label class to use.

The index of the label to be used as class label. The first label is 0, negative indexes are relative to the end.

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Dimensionality of the vectors to generate.

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The index of the label to be used as external Id. The first label is 0; negative indexes are relative to the end.

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The filters to apply to the input data.

Seed for randomly generating vectors

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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The name of the input file to be parsed.

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Parser to provide the database.

Database size to generate.

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Object ID to start counting with

Default: 0

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size of the D-neighborhood

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minimum fraction of objects that must be outside the D-neighborhood of an outlier

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The maximum radius of the neighborhood to be considered.

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Threshold for minimum number of points in the epsilon-neighborhood of a point. The suggested value is '2 * dim - 1'.

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Threshold for minimum number of points within a cluster.

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Threshold for output accuracy fraction digits.

Default: 4

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Flag to use random sample (use knn query around centroid, if flag is not set).

Default: false

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Threshold for the size of the random sample to use. Default value is size of the complete dataset.

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an integer between 1 and the dimensionality of the feature space 1 specifying the dimension to be considered for distance computation.

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A comma separated list of positive doubles specifying the maximum radius of the neighborhood to be considered in each dimension for determination of the preference vector (default is 0.001 in each dimension). If only one value is specified, this value will be used for each dimension.

Default: [D@42deb43a

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The maximum radius of the neighborhood to be considered in each dimension for determination of the preference vector.

Default: 0.001

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Positive threshold for minumum numbers of points in the epsilon-neighborhood of a point. The value of the preference vector in dimension d_i is set to 1 if the epsilon neighborhood contains more than dish.minpts points and the following condition holds: for all dimensions d_j: |neighbors(d_i) intersection neighbors(d_j)| >= dish.minpts.

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The minimum number of points as a smoothing factor to avoid the single-link-effekt.

Default: 1

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The strategy for determination of the preference vector, available strategies are: [APRIORI| MAX_INTERSECTION](default is MAX_INTERSECTION)

Default: MAX_INTERSECTION

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a comma separated array of integer values, where 0 <= d_i < the dimensionality of the feature space specifying the dimensions to be considered for distance computation. If this parameter is not set, no dimensions will be considered, i.e. the distance between two objects is always 0.

Parameter for:

The dimension containing the latitude.

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The dimension containing the longitude.

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The name of the file containing the distance matrix.

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The name of the file containing the distance matrix.

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Parser used to load the distance matrix.

Weights to use for the distance function.

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Distance index to use.

Beta distribution alpha parameter

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Beta distribution beta parameter

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Cauchy distribution gamma/shape parameter.

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Chi distribution degrees of freedom parameter.

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Constant value.

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Exponential distribution rate (lambda) parameter (inverse of scale).

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Gamma distribution k = alpha parameter.

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Gamma distribution theta = 1/beta parameter.

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First shape parameter of kappa distribution.

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Second shape parameter of kappa distribution.

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Laplace distribution rate (lambda) parameter (inverse of scale).

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Distribution location parameter

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Shift offset parameter.

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Shift offset parameter.

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Mean of the distribution before logscaling.

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Standard deviation of the distribution before logscaling.

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Shifting offset, so the distribution does not begin at 0.

Default: 0.0

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Maximum value of distribution.

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Minimum value of distribution.

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Number of trials.

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Success probability.

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Random generation data source.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Distribution scale parameter

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Distribution shape parameter

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Skew of the distribution.

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Degrees of freedom.

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Ignore zero distances, beneficial for data sets with many duplicates.

Default: false

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Quantile to compute.

Default: 0.1

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Number of distances to compute, either relative (values less than 1), or absolute.

Parameter for:

Random generator seed.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Number of bins to use in the histogram. By default, it is only guaranteed to be within 1*n and 2*n of the given number.

Default: 20

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In a first pass, compute the exact minimum and maximum, at the cost of O(2*n*n) instead of O(n*n). The number of resulting bins is guaranteed to be as requested.

Default: false

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Enable sampling of O(n) size to determine the minimum and maximum distances approximately. The resulting number of bins can be larger than the given n.

Default: false

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Minimum relative density for a set of points to be considered a cluster (|C|>=doc.alpha*|S|).

Default: 0.2

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Preference of cluster size versus number of relevant dimensions (higher value means higher priority on larger clusters).

Default: 0.8

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Use heuristics as described, thus using the FastDOC algorithm (not yet implemented).

Default: false

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Random seed, for reproducible experiments.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Maximum extent of scattering of points along a single attribute for the attribute to be considered relevant.

Default: 0.05

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Radius increase factor.

Default: 1.1

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Number of neighbors to get for DWOF score outlier detection.

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The band size for time series alignment. By default, no constraint is used. If the value is larger than 0, it will be considered absolute, otherwise relative to the longer sequence. Note that 0 does not make sense: use Euclidean distance then instead.

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the delta parameter (similarity threshold) for EDR (positive number)

Default: 1.0

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Method to choose the initial cluster centers.

The termination criterion for maximization of E(M): E(M) - E(M') < em.delta

Default: 1.0E-5

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The number of clusters to find.

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Model factory.

Parameter to enable debugging for particular packages.

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Quantile to use in median voting.

Default: 0.5

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Voting strategy to use in the ensemble.

Number of neighbors to use for PCA.

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Threshold for approximate linear dependency: the strong eigenvectors of q are approximately linear dependent from the strong eigenvectors p if the following condition holds for all stroneg eigenvectors q_i of q (lambda_q < lambda_p): q_i' * M^check_p * q_i <= delta^2.

Default: 0.1

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Threshold for the maximum distance between two approximately linear dependent subspaces of two objects p and q (lambda_q < lambda_p) before considering them as parallel.

Default: 0.1

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The g parameter of ERP - comparison value to use in gaps.

Default: 0.0

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Class to evaluate the results with.

The inner neighborhood predicate to use.

The inner neighborhood predicate to use.

The number of steps allowed in the neighborhood graph.

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The number of steps allowed in the neighborhood graph.

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Filename with the precomputed k nearest neighbors.

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The file name containing the (external) cluster vector.

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The file listing the neighbors.

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The file name containing the (external) outlier scores.

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The pattern to match object ID prefix

Default: ^ID=

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Flag to signal an inverted outlier score.

Default: false

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Class to use as scaling function.

The pattern to match object score prefix

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Keep the first object chosen (which is chosen randomly) for the farthest points heuristic.

Default: false

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Number of nearest neighbors to use for ABOD.

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Random seed for generating projections.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Use the breadth first combinations instead of the cumulative sum approach

Default: false

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The number of instances to use in the ensemble.

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Specify a particular random seed.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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The number of samples to draw from each uncertain object to determine the epsilon-neighborhood.

Parameter for:

Random generator used to draw samples.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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The amount of samples that have to be epsilon-close for two objects to be neighbors.

Default: 0.5

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Dimensionality of vectors to retain.

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Regularize scores before using Gamma scaling.

Default: false

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Invert the value range to [0:1], with 1 being outliers instead of 0.

Default: false

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Core point predicate for Generalized DBSCAN

Use a model that keeps track of core points. Needs more memory.

Default: false

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Neighborhood predicate for Generalized DBSCAN

The number of reference points to be generated.

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Random generator seed.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Scale the grid by the given factor. This can be used to obtain reference points outside the used data space.

Default: 1.0

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Earth model to use for projection. Default: spherical model.

Filter to use for dimensionality reduction.

Significance niveau

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k nearest neighbors to use

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Scale the grid by the given factor. This can be used to obtain reference points outside the used data space.

Default: 1.0

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The number of partitions in each dimension. Points will be placed on the edges of the grid, except for a grid size of 0, where only the mean is generated as reference point.

Default: 1

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Produce a hierarchical output.

Default: false

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The minimum cluster size.

Default: 1

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The minimum cluster size.

Default: 1

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Threshold for minimum number of points in the epsilon-neighborhood of a point (including this point).

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The threshold for 'strong' eigenvectors: the 'strong' eigenvectors explain a portion of at least alpha of the total variance.

Default: 0.85

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Threshold of a distance between a vector q and a given space that indicates that q adds a new dimension to the space.

Default: 0.25

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Optional parameter to specify the number of nearest neighbors considered in the PCA. If this parameter is not set, k is set to the value of parameter mu.

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Specifies the smoothing factor. The mu-nearest neighbor is used to compute the correlation reachability of an object.

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The Algorithm that performs the actual outlier detection on the resulting set of subspace

The discriminance value that determines the size of the test statistic .

Default: 0.1

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The threshold that determines how many d-dimensional subspace candidates to retain in each step of the generation

Default: 100

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The number of iterations in the Monte-Carlo processing.

Default: 50

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The random seed.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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The statistical test that is used to calculate the deviation of two data samples

Generate a truncated hierarchical clustering result (or strict partitions).

Default: false

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Linkage method to use (e.g. Ward, Single-Link)

Merge singleton clusters into parent. This produces a more complex hierarchy, but that is easier to understand.

Default: false

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The minimum number of clusters to extract (there may be more clusters when tied).

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The threshold level for which to extract the clusters.

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The thresholding mode to use for extracting clusters: by desired number of clusters, or by distance threshold.

Default: BY_MINCLUSTERS

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Max. Hilbert-Level

Default: 32

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Compute up to k next neighbors

Default: 5

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Compute n outliers

Default: 10

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output of Top n or all elements

Default: TopN

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The maximum absolute variance along a coordinate axis.

Default: 0.01

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The number of nearest neighbors considered to determine the preference vector. If this value is not defined, k ist set to three times of the dimensionality of the database objects.

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Use separate frequencies for outliers and non-outliers.

Default: false

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Random generator seed for holdout evaluation.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Nearest neighbor to use for the statistic

Default: 1

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Maximum values in each dimension. If no value is specified, the maximum value in each dimension will be used. If only one value is specified, this value will be used for all dimensions.

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Minimum values in each dimension. If no value is specified, the minimum value in each dimension will be used. If only one value is specified, this value will be used for all dimensions.

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The number of times to repeat the experiment (default: 1)

Default: 1

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Number of object / random samples to analyze.

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The random number generator.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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The dimensionality of the histogram in hue, saturation and brightness.

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Alpha value for hull drawing (in projected space!).

Default: Infinity

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Class to estimate ID from distance distribution.

Number of nearest neighbors to use for ID estimation (usually 20-100).

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Number of DBID to generate.

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First integer DBID to generate.

Default: 0

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Estimation method for intrinsic dimensionality.

Number of kNN (absolute or relative)

Default: 50.0

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Sample size (absolute or relative)

Default: 0.1

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Distance function to build the index for.

Number of reference points to use.

Parameter for:

Method to choose the reference points.

Estimator of intrinsic dimensionality.

Context set size (ID estimation).

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Reference set size.

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Partially transparent filling of index pages.

Default: false

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The pagefile factory for storing the index.

The number of nearest neighbors of an object to be considered for computing its INFLO score.

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The pruning threshold

Default: 1.0

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Maximum length of frequent itemsets to report. This can help to reduce the output size to only the most interesting patterns.

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Minimum length of frequent itemsets to report. This can help to reduce the output size to only the most interesting patterns.

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Threshold for minimum support as minimally required number of transactions (if > 1) or the minimum frequency (if <= 1).

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Jitter amount relative to data.

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Jitter random seed.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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The data sources to join.

The data sources to join.

The data sources to join.

Port for the JSON web server to listen on.

Default: 8080

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Maximum leaf size for the k-d-tree. Nodes will be split until their size is smaller than this threshold.

Default: 1

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Intrinsic dimensionality of this data set. Use -1 for using the true data dimensionality, but values such as 0-2 often offer better performance.

Default: -1

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Maximum value of k to analyze.

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Minimum value of k to analyze.

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Kernel density function to use.

Minimum bandwidth for kernel density estimation.

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Scaling factor for the kernel function.

Default: 0.5

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Standard deviation of the laplace RBF kernel.

Default: 1.0

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The bias of the polynomial kernel, a constant that is added to the scalar product.

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The degree of the polynomial kernel function. Default: 2

Default: 2

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Constant term in the rational quadratic kernel.

Default: 1.0

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Standard deviation of the Gaussian RBF kernel.

Default: 1.0

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Sigmoid c parameter (scaling).

Default: 1.0

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Sigmoid theta parameter (bias).

Default: 0.0

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Dimension to use for clustering. For one-dimensional data, use 0.

Default: 0

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Kernel function for density estimation.

Number of nearest neighbors to use for bandwidth estimation.

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Kernel density estimation mode (baloon estimator vs. sample point estimator).

Default: BALLOON

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Half width of sliding window to find local minima.

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Kernel to use for kernel density LOF.

KMeans variant to run multiple times.

Clustering algorithm to use for detecting outliers.

KMeans variant to run multiple times.

Number of blocks to use for processing. Means will be recomputed after each block.

Default: 10

Parameter for:

Random source for producing blocks.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Method to choose the initial means.

The number of clusters to find.

Parameter for:

The maximum number of iterations to do. 0 means no limit.

Default: 0

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Initial means for k-means.

Parameter for:

Quality measure variant for deciding which run to keep.

Sample set size (if > 1) or sampling rante (if < 1).

Parameter for:

The random number generator seed.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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The number of trials to run.

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Automatically open the result file.

Default: false

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Use simpler KML objects, compatibility mode.

Default: false

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Additional scaling function for KML colorization.

Number of neighbors to retreive for kNN benchmarking.

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Data source for the queries. If not set, the queries are taken from the database.

Random generator for sampling.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Sampling size parameter. If the value is less or equal 1, it is assumed to be the relative share. Larger values will be interpreted as integer sizes. By default, all data will be used.

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The number of neighbors to take into account for classification.

Default: 1

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Specifies the distance of the k-distant object to be assessed, ignoring the query object.

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The percentage of objects to use for sampling, or the absolute number of samples.

Default: 1.0

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Random generator seed for sampling.

Default: de.lmu.ifi.dbs.elki.math.random.RandomFactory@5af9926a

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Specifies the k-nearest neighbors to be assigned.

Default: 1

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The k nearest neighbor, excluding the query point (i.e. query point is the 0-nearest-neighbor)

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The k nearest neighbor, excluding the query point (i.e. query point is the 0-nearest-neighbor)

Parameter for:

the allowed deviation in x direction for LCSS alignment (positive double value, 0 <= pDelta <= 1)

Default: 0.1

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the allowed deviation in y direction for LCSS alignment (positive double value, 0 <= pEpsilon <= 1)

Default: 0.05

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Score scaling parameter for LDF.

Default: 0.1

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Kernel bandwidth multiplier for LDF.

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Number of neighbors to use for LDF.

Parameter for: