Uses of Interface
de.lmu.ifi.dbs.elki.database.ids.DBIDRef

Packages that use DBIDRef

Package	Description
de.lmu.ifi.dbs.elki.algorithm.clustering	Clustering algorithms.
de.lmu.ifi.dbs.elki.algorithm.clustering.correlation	Correlation clustering algorithms
de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan	Generalized DBSCAN.
de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.clique	Helper classes for the CLIQUE algorithm.
de.lmu.ifi.dbs.elki.algorithm.clustering.trivial	Trivial clustering algorithms: all in one, no clusters, label clusterings These methods are mostly useful for providing a reference result in evaluation.
de.lmu.ifi.dbs.elki.algorithm.outlier	Outlier detection algorithms
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood	Spatial outlier neighborhood classes
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood.weighted	Weighted Neighborhood definitions.
de.lmu.ifi.dbs.elki.algorithm.outlier.subspace	Subspace outlier detection methods.
de.lmu.ifi.dbs.elki.application.jsmap	JavaScript based map client - server architecture.
de.lmu.ifi.dbs.elki.application.visualization	Visualization applications in ELKI.
de.lmu.ifi.dbs.elki.data	Basic classes for different data types, database object types and label types.
de.lmu.ifi.dbs.elki.database	ELKI database layer - loading, storing, indexing and accessing data
de.lmu.ifi.dbs.elki.database.datastore	General data store layer API (along the lines of Map<DBID, T> - use everywhere!)
de.lmu.ifi.dbs.elki.database.datastore.memory	Memory data store implementation for ELKI.
de.lmu.ifi.dbs.elki.database.ids	Database object identification and ID group handling API.
de.lmu.ifi.dbs.elki.database.ids.generic	Database object identification and ID group handling - generic implementations.
de.lmu.ifi.dbs.elki.database.ids.integer	Integer-based DBID implementation -- do not use directly - always use DBIDUtil.
de.lmu.ifi.dbs.elki.database.query.distance	Prepared queries for distances.
de.lmu.ifi.dbs.elki.database.query.knn	Prepared queries for k nearest neighbor (kNN) queries.
de.lmu.ifi.dbs.elki.database.query.range	Prepared queries for ε-range queries.
de.lmu.ifi.dbs.elki.database.query.rknn	Prepared queries for reverse k nearest neighbor (rkNN) queries.
de.lmu.ifi.dbs.elki.database.query.similarity	Prepared queries for similarity functions.
de.lmu.ifi.dbs.elki.database.relation	Relations, materialized and virtual (views).
de.lmu.ifi.dbs.elki.distance.distancefunction	Distance functions for use within ELKI.
de.lmu.ifi.dbs.elki.distance.distancefunction.adapter	Distance functions deriving distances from e.g. similarity measures
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation	Distance functions using correlations.
de.lmu.ifi.dbs.elki.distance.distancefunction.external	Distance functions using external data sources.
de.lmu.ifi.dbs.elki.distance.distancefunction.subspace	Distance functions based on subspaces.
de.lmu.ifi.dbs.elki.distance.distanceresultlist	Classes for building and storing the results of distance-based queries The classes in this package essentially form three groups: KNNHeap for building kNN results.
de.lmu.ifi.dbs.elki.distance.similarityfunction	Similarity functions.
de.lmu.ifi.dbs.elki.evaluation.roc	Evaluation of rankings using ROC AUC (Receiver Operation Characteristics - Area Under Curve)
de.lmu.ifi.dbs.elki.index	Index structure implementations
de.lmu.ifi.dbs.elki.index.preprocessed	Index structure based on preprocessors
de.lmu.ifi.dbs.elki.index.preprocessed.knn	Indexes providing KNN and rKNN data.
de.lmu.ifi.dbs.elki.index.preprocessed.localpca	Index using a preprocessed local PCA.
de.lmu.ifi.dbs.elki.index.preprocessed.preference	Indexes storing preference vectors.
de.lmu.ifi.dbs.elki.index.preprocessed.snn	Indexes providing nearest neighbor sets
de.lmu.ifi.dbs.elki.index.preprocessed.subspaceproj	Index using a preprocessed local subspaces.
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees	Metrical index structures based on the concepts of the M-Tree supporting processing of reverse k nearest neighbor queries by using the k-nn distances of the entries.
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp	MkAppTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop	MkCoPTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax	MkMaxTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab	MkTabTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree	MTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.query	Classes for performing queries (knn, range, ...) on metrical trees.
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants	R*-Tree and variants.
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu	DeLiCluTree
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.query	Queries on the R-Tree family of indexes: kNN and range queries.
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar	RStarTree
de.lmu.ifi.dbs.elki.result	Result types, representation and handling
de.lmu.ifi.dbs.elki.result.optics	Result classes for OPTICS.
de.lmu.ifi.dbs.elki.result.outlier	Outlier result classes
de.lmu.ifi.dbs.elki.result.textwriter	Text serialization (CSV, Gnuplot, Console, ...)
de.lmu.ifi.dbs.elki.utilities.datastructures	Basic memory structures such as heaps and object hierarchies.
de.lmu.ifi.dbs.elki.visualization.style	Style management for ELKI visualizations.
de.lmu.ifi.dbs.elki.visualization.visualizers.pairsegments	Visualizers for inspecting cluster differences using pair counting segments.
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot	Visualizers based on scatterplots.
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.outlier	Visualizers for outlier scores based on 2D projections.
tutorial.clustering	Classes from the tutorial on implementing a custom k-means variation.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering with parameters of type DBIDRef

Modifier and Type	Method and Description
int	SLINK.CompareByLambda.compare(DBIDRef id1, DBIDRef id2)
int	SLINK.CompareByDoubleLambda.compare(DBIDRef id1, DBIDRef id2)
protected void	DBSCAN.expandCluster(Relation<O> relation, RangeQuery<O,D> rangeQuery, DBIDRef startObjectID, FiniteProgress objprog, IndefiniteProgress clusprog) DBSCAN-function expandCluster.
double[]	EM.getProbClusterIGivenX(DBIDRef index) Get the probabilities for a given point.
private Cluster<DendrogramModel<D>>	SLINK.makeCluster(DBIDRef lead, D depth, DBIDs members, ModifiableHierarchy<Cluster<DendrogramModel<D>>> hier) Make the cluster for the given object
private void	SLINK.step1(DBIDRef id, WritableDBIDDataStore pi, WritableDataStore<D> lambda) First step: Initialize P(id) = id, L(id) = infinity.
private void	SLINK.step1double(DBIDRef id, WritableDBIDDataStore pi, WritableDoubleDistanceDataStore lambda) First step: Initialize P(id) = id, L(id) = infinity.
private void	SLINK.step2(DBIDRef id, DBIDs processedIDs, DistanceQuery<O,D> distFunc, WritableDataStore<D> m) Second step: Determine the pairwise distances from all objects in the pointer representation to the new object with the specified id.
private void	SLINK.step2double(DBIDRef id, DBIDs processedIDs, Relation<? extends O> relation, PrimitiveDoubleDistanceFunction<? super O> distFunc, WritableDoubleDistanceDataStore m) Second step: Determine the pairwise distances from all objects in the pointer representation to the new object with the specified id.
private void	SLINK.step3(DBIDRef id, WritableDBIDDataStore pi, WritableDataStore<D> lambda, DBIDs processedIDs, WritableDataStore<D> m) Third step: Determine the values for P and L
private void	SLINK.step3double(DBIDRef id, WritableDBIDDataStore pi, WritableDoubleDistanceDataStore lambda, DBIDs processedIDs, WritableDoubleDistanceDataStore m) Third step: Determine the values for P and L
private void	SLINK.step4(DBIDRef id, WritableDBIDDataStore pi, WritableDataStore<D> lambda, DBIDs processedIDs) Fourth step: Actualize the clusters if necessary
private void	SLINK.step4double(DBIDRef id, WritableDBIDDataStore pi, WritableDoubleDistanceDataStore lambda, DBIDs processedIDs) Fourth step: Actualize the clusters if necessary

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.correlation

Constructors in de.lmu.ifi.dbs.elki.algorithm.clustering.correlation with parameters of type DBIDRef

Constructor and Description
ORCLUS.ORCLUSCluster(V o, DBIDRef id, NumberVector.Factory<V,?> factory) Creates a new cluster containing the specified object o.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan with parameters of type DBIDRef

Modifier and Type	Method and Description
DistanceDBIDResult<D>	EpsilonNeighborPredicate.Instance.getNeighbors(DBIDRef reference)
T	NeighborPredicate.Instance.getNeighbors(DBIDRef reference) Get the neighbors of a reference object for DBSCAN.
boolean	MinPtsCorePredicate.Instance.isCorePoint(DBIDRef point, DBIDs neighbors)
boolean	CorePredicate.Instance.isCorePoint(DBIDRef point, T neighbors) Decide whether the point is a core point, based on its neighborhood.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.clique

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.clique with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	CLIQUEUnit.addFeatureVector(DBIDRef id, V vector) Adds the id of the specified feature vector to this unit, if this unit contains the feature vector.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.trivial

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.trivial with parameters of type DBIDRef

Modifier and Type	Method and Description
private void	ByLabelClustering.assign(HashMap<String,DBIDs> labelMap, String label, DBIDRef id) Assigns the specified id to the labelMap according to its label
private void	ByLabelHierarchicalClustering.assign(HashMap<String,DBIDs> labelMap, String label, DBIDRef id) Assigns the specified id to the labelMap according to its label

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier with parameters of type DBIDRef

Modifier and Type	Method and Description
private double	ABOD.calcCos(KernelMatrix kernelMatrix, DBIDRef aKey, DBIDRef bKey) Compute the cosinus value between vectors aKey and bKey.
private double	ABOD.calcDenominator(KernelMatrix kernelMatrix, DBIDRef aKey, DBIDRef bKey, DBIDRef cKey)
private Heap<DoubleDBIDPair>	ABOD.calcDistsandNN(Relation<V> data, KernelMatrix kernelMatrix, int sampleSize, DBIDRef aKey, WritableDoubleDataStore dists)
private Heap<DoubleDBIDPair>	ABOD.calcDistsandRNDSample(Relation<V> data, KernelMatrix kernelMatrix, int sampleSize, DBIDRef aKey, WritableDoubleDataStore dists)
private double[]	ABOD.calcFastNormalization(DBIDRef x, WritableDoubleDataStore dists, DBIDs ids)
private double	ABOD.calcNumerator(KernelMatrix kernelMatrix, DBIDRef aKey, DBIDRef bKey, DBIDRef cKey)
private void	ABOD.generateExplanation(StringBuilder buf, Relation<V> data, DBIDRef key, DBIDs expList)
private double	ABOD.getAbofFilter(KernelMatrix kernelMatrix, DBIDRef aKey, WritableDoubleDataStore dists, double fulCounter, double counter, DBIDs neighbors)
private int	ABOD.mapDBID(DBIDRef aKey)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood with parameters of type DBIDRef

Modifier and Type	Method and Description
DBIDs	AbstractPrecomputedNeighborhood.getNeighborDBIDs(DBIDRef reference)
DBIDs	NeighborSetPredicate.getNeighborDBIDs(DBIDRef reference) Get the neighbors of a reference object for DBSCAN.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood.weighted

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood.weighted with parameters of type DBIDRef

Modifier and Type	Method and Description
Collection<DoubleDBIDPair>	UnweightedNeighborhoodAdapter.getWeightedNeighbors(DBIDRef reference)
Collection<DoubleDBIDPair>	LinearWeightedExtendedNeighborhood.getWeightedNeighbors(DBIDRef reference)
Collection<DoubleDBIDPair>	WeightedNeighborSetPredicate.getWeightedNeighbors(DBIDRef reference) Get the neighbors of a reference object for DBSCAN.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.subspace

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.subspace with parameters of type DBIDRef

Modifier and Type	Method and Description
void	SOD.SODProxyScoreResult.delete(DBIDRef id)
Double	SOD.SODProxyScoreResult.get(DBIDRef objID)
private DBIDs	SOD.getNearestNeighbors(Relation<V> relation, SimilarityQuery<V,D> simQ, DBIDRef queryObject) Provides the k nearest neighbors in terms of the shared nearest neighbor distance.
double	OUTRES.outresScore(int s, BitSet subspace, DBIDRef id, OUTRES.KernelDensityEstimator kernel) Main loop of OUTRES.
void	SOD.SODProxyScoreResult.set(DBIDRef id, Double val)
private DoubleDistanceDBIDList	OUTRES.subsetNeighborhoodQuery(DistanceDBIDResult<DoubleDistance> neighc, DBIDRef dbid, PrimitiveDoubleDistanceFunction<? super V> df, double adjustedEps, OUTRES.KernelDensityEstimator kernel) Refine neighbors within a subset.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.application.jsmap

Methods in de.lmu.ifi.dbs.elki.application.jsmap with parameters of type DBIDRef

Modifier and Type	Method and Description
protected void	JSONWebServer.bundleToJSON(JSONBuffer re, DBIDRef id) Serialize an object bundle to JSON.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.application.visualization

Methods in de.lmu.ifi.dbs.elki.application.visualization with parameters of type DBIDRef

Modifier and Type	Method and Description
private Element	KNNExplorer.ExplorerWindow.plotSeries(DBIDRef idx, int resolution) Plot a single time series.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.data

Methods in de.lmu.ifi.dbs.elki.data with parameters of type DBIDRef

Modifier and Type	Method and Description
int	VectorUtil.SortDBIDsBySingleDimension.compare(DBIDRef id1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database

Methods in de.lmu.ifi.dbs.elki.database with parameters of type DBIDRef

Modifier and Type	Method and Description
SingleObjectBundle	UpdatableDatabase.delete(DBIDRef id) Removes and returns the specified objects with the given ids from the database.
SingleObjectBundle	HashmapDatabase.delete(DBIDRef id) Removes the object from the database (by calling HashmapDatabase.doDelete(DBIDRef)) and indexes and fires a deletion event.
private void	HashmapDatabase.doDelete(DBIDRef id) Removes the object with the specified id from this database.
private void	DatabaseEventManager.fireObjectChanged(DBIDRef object, DataStoreEvent.Type type) Handles a DataStoreEvent with the specified type.
void	DatabaseEventManager.fireObjectInserted(DBIDRef insertion) Convenience method, calls fireObjectChanged(insertion, DataStoreEvent.Type.INSERT).
protected void	DatabaseEventManager.fireObjectRemoved(DBIDRef deletion) Convenience method, calls fireObjectChanged(deletion, DataStoreEvent.Type.DELETE).
SingleObjectBundle	AbstractDatabase.getBundle(DBIDRef id)
SingleObjectBundle	Database.getBundle(DBIDRef id) Returns the DatabaseObject represented by the specified id.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.datastore

Methods in de.lmu.ifi.dbs.elki.database.datastore with parameters of type DBIDRef

Modifier and Type	Method and Description
void	DBIDDataStore.assignVar(DBIDRef id, DBIDVar var) Retrieves an object from the storage.
void	WritableDataStore.delete(DBIDRef id) Delete the contents for a particular ID and notifies the registered listeners.
double	DoubleDistanceDataStore.doubleValue(DBIDRef id) Retrieves an object from the storage.
double	DoubleDataStore.doubleValue(DBIDRef id) Retrieves an object from the storage.
Integer	IntegerDataStore.get(DBIDRef id) Deprecated. Use IntegerDataStore.intValue(de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
T	DataStore.get(DBIDRef id) Retrieves an object from the storage.
DoubleDistance	DoubleDistanceDataStore.get(DBIDRef id) Deprecated. Use DoubleDistanceDataStore.doubleValue(de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
Double	DoubleDataStore.get(DBIDRef id) Deprecated. Use DoubleDataStore.doubleValue(de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
DBID	DBIDDataStore.get(DBIDRef id) Deprecated. Use DBIDDataStore.assignVar(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, de.lmu.ifi.dbs.elki.database.ids.DBIDVar) and a DBIDVar instead, to avoid boxing/unboxing cost.
int	IntegerDataStore.intValue(DBIDRef id) Retrieves an object from the storage.
int	DataStoreIDMap.mapDBIDToOffset(DBIDRef dbid) Map a DBID to an array offset.
DBID	WritableDBIDDataStore.put(DBIDRef id, DBID value) Deprecated. Use WritableDBIDDataStore.putDBID(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
void	WritableDBIDDataStore.put(DBIDRef id, DBIDRef value) Associates the specified value with the specified id in this storage.
double	WritableDoubleDataStore.put(DBIDRef id, double value) Associates the specified value with the specified id in this storage.
double	WritableDoubleDistanceDataStore.put(DBIDRef id, double value) Associates the specified value with the specified id in this storage.
Double	WritableDoubleDataStore.put(DBIDRef id, Double value) Deprecated. Use WritableDoubleDataStore.putDouble(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, double) instead, to avoid boxing/unboxing cost.
DoubleDistance	WritableDoubleDistanceDataStore.put(DBIDRef id, DoubleDistance value) Deprecated. Use WritableDoubleDistanceDataStore.putDouble(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, double) instead, to avoid boxing/unboxing cost.
int	WritableIntegerDataStore.put(DBIDRef id, int value) Associates the specified value with the specified id in this storage.
Integer	WritableIntegerDataStore.put(DBIDRef id, Integer value) Deprecated. Use WritableIntegerDataStore.putInt(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, int) instead, to avoid boxing/unboxing cost.
T	WritableDataStore.put(DBIDRef id, T value) Associates the specified value with the specified id in this storage.
void	WritableDBIDDataStore.putDBID(DBIDRef id, DBIDRef value) Associates the specified value with the specified id in this storage.
double	WritableDoubleDataStore.putDouble(DBIDRef id, double value) Associates the specified value with the specified id in this storage.
double	WritableDoubleDistanceDataStore.putDouble(DBIDRef id, double value) Associates the specified value with the specified id in this storage.
int	WritableIntegerDataStore.putInt(DBIDRef id, int value) Associates the specified value with the specified id in this storage.
boolean	WritableRecordStore.remove(DBIDRef id) Remove an object from the store, all columns.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.datastore.memory

Methods in de.lmu.ifi.dbs.elki.database.datastore.memory with parameters of type DBIDRef

Modifier and Type	Method and Description
void	ArrayDBIDStore.assignVar(DBIDRef id, DBIDVar var)
void	MapIntegerDBIDDBIDStore.assignVar(DBIDRef id, DBIDVar var)
void	MapIntegerDBIDDoubleDistanceStore.delete(DBIDRef id)
void	MapIntegerDBIDIntegerStore.delete(DBIDRef id)
void	MapIntegerDBIDStore.delete(DBIDRef id)
void	ArrayDoubleStore.delete(DBIDRef id)
void	ArrayStore.delete(DBIDRef id)
void	MapRecordStore.StorageAccessor.delete(DBIDRef id)
void	MapStore.delete(DBIDRef id)
void	MapIntegerDBIDRecordStore.StorageAccessor.delete(DBIDRef id)
void	ArrayRecordStore.StorageAccessor.delete(DBIDRef id)
void	ArrayIntegerStore.delete(DBIDRef id)
void	ArrayDBIDStore.delete(DBIDRef id)
void	ArrayDoubleDistanceStore.delete(DBIDRef id)
void	MapIntegerDBIDDBIDStore.delete(DBIDRef id)
void	MapIntegerDBIDDoubleStore.delete(DBIDRef id)
double	MapIntegerDBIDDoubleDistanceStore.doubleValue(DBIDRef id)
double	ArrayDoubleStore.doubleValue(DBIDRef id)
double	ArrayDoubleDistanceStore.doubleValue(DBIDRef id)
double	MapIntegerDBIDDoubleStore.doubleValue(DBIDRef id)
DoubleDistance	MapIntegerDBIDDoubleDistanceStore.get(DBIDRef id) Deprecated.
Integer	MapIntegerDBIDIntegerStore.get(DBIDRef id) Deprecated.
T	MapIntegerDBIDStore.get(DBIDRef id)
Double	ArrayDoubleStore.get(DBIDRef id) Deprecated.
T	ArrayStore.get(DBIDRef id)
T	MapRecordStore.StorageAccessor.get(DBIDRef id)
T	MapStore.get(DBIDRef id)
T	MapIntegerDBIDRecordStore.StorageAccessor.get(DBIDRef id)
T	ArrayRecordStore.StorageAccessor.get(DBIDRef id)
Integer	ArrayIntegerStore.get(DBIDRef id) Deprecated.
DBID	ArrayDBIDStore.get(DBIDRef id) Deprecated.
DoubleDistance	ArrayDoubleDistanceStore.get(DBIDRef id) Deprecated.
DBID	MapIntegerDBIDDBIDStore.get(DBIDRef id) Deprecated.
Double	MapIntegerDBIDDoubleStore.get(DBIDRef id) Deprecated.
protected <T> T	MapRecordStore.get(DBIDRef id, int index) Actual getter.
protected <T> T	MapIntegerDBIDRecordStore.get(DBIDRef id, int index) Actual getter.
protected <T> T	ArrayRecordStore.get(DBIDRef id, int index) Actual getter
int	MapIntegerDBIDIntegerStore.intValue(DBIDRef id)
int	ArrayIntegerStore.intValue(DBIDRef id)
DBID	ArrayDBIDStore.put(DBIDRef id, DBID value) Deprecated.
DBID	MapIntegerDBIDDBIDStore.put(DBIDRef id, DBID value) Deprecated.
void	ArrayDBIDStore.put(DBIDRef id, DBIDRef value)
void	MapIntegerDBIDDBIDStore.put(DBIDRef id, DBIDRef value)
double	MapIntegerDBIDDoubleDistanceStore.put(DBIDRef id, double value)
double	ArrayDoubleStore.put(DBIDRef id, double value)
double	ArrayDoubleDistanceStore.put(DBIDRef id, double value)
double	MapIntegerDBIDDoubleStore.put(DBIDRef id, double value)
Double	ArrayDoubleStore.put(DBIDRef id, Double value) Deprecated.
Double	MapIntegerDBIDDoubleStore.put(DBIDRef id, Double value) Deprecated.
DoubleDistance	MapIntegerDBIDDoubleDistanceStore.put(DBIDRef id, DoubleDistance value) Deprecated.
DoubleDistance	ArrayDoubleDistanceStore.put(DBIDRef id, DoubleDistance value) Deprecated.
int	MapIntegerDBIDIntegerStore.put(DBIDRef id, int value)
int	ArrayIntegerStore.put(DBIDRef id, int value)
Integer	MapIntegerDBIDIntegerStore.put(DBIDRef id, Integer value) Deprecated.
Integer	ArrayIntegerStore.put(DBIDRef id, Integer value) Deprecated.
T	MapIntegerDBIDStore.put(DBIDRef id, T value)
T	ArrayStore.put(DBIDRef id, T value)
T	MapRecordStore.StorageAccessor.put(DBIDRef id, T value)
T	MapStore.put(DBIDRef id, T value)
T	MapIntegerDBIDRecordStore.StorageAccessor.put(DBIDRef id, T value)
T	ArrayRecordStore.StorageAccessor.put(DBIDRef id, T value)
void	ArrayDBIDStore.putDBID(DBIDRef id, DBIDRef value)
void	MapIntegerDBIDDBIDStore.putDBID(DBIDRef id, DBIDRef value)
double	MapIntegerDBIDDoubleDistanceStore.putDouble(DBIDRef id, double value)
double	ArrayDoubleStore.putDouble(DBIDRef id, double value)
double	ArrayDoubleDistanceStore.putDouble(DBIDRef id, double value)
double	MapIntegerDBIDDoubleStore.putDouble(DBIDRef id, double value)
int	MapIntegerDBIDIntegerStore.putInt(DBIDRef id, int value)
int	ArrayIntegerStore.putInt(DBIDRef id, int value)
boolean	MapRecordStore.remove(DBIDRef id)
boolean	MapIntegerDBIDRecordStore.remove(DBIDRef id)
boolean	ArrayRecordStore.remove(DBIDRef id)
protected <T> T	MapRecordStore.set(DBIDRef id, int index, T value) Actual setter.
protected <T> T	MapIntegerDBIDRecordStore.set(DBIDRef id, int index, T value) Actual setter.
protected <T> T	ArrayRecordStore.set(DBIDRef id, int index, T value) Actual setter

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.ids

Subinterfaces of DBIDRef in de.lmu.ifi.dbs.elki.database.ids

Modifier and Type	Interface and Description
interface	DBID Database ID object.
interface	DBIDArrayIter Array iterators that can also go backwards and seek.
interface	DBIDArrayMIter Modifiable array iterator.
interface	DBIDIter Iterator for DBIDs.
interface	DBIDMIter Modifiable DBID iterator.
interface	DBIDVar (Persistent) variable storing a DBID reference.
interface	DistanceDBIDPair<D extends Distance<D>> Pair containing a distance an an object ID Note: there is no getter for the object, as this is a DBIDRef.
interface	DoubleDBIDPair Pair of a double value and a DBID
interface	DoubleDistanceDBIDPair Pair containing a double distance a DBID.

Classes in de.lmu.ifi.dbs.elki.database.ids that implement DBIDRef

Modifier and Type	Class and Description
protected static class	EmptyDBIDs.EmptyDBIDIterator Iterator for empty DBIDs-

Methods in de.lmu.ifi.dbs.elki.database.ids that return DBIDRef

Modifier and Type	Method and Description
static DBIDRef	DBIDUtil.invalid() Get the invalid special ID.
DBIDRef	DBIDFactory.invalid() Get the invalid DBID value, usable as "undefined" placeholder.

Methods in de.lmu.ifi.dbs.elki.database.ids with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	ModifiableDBIDs.add(DBIDRef id) Add a single DBID to the collection.
static int	DBIDUtil.asInteger(DBIDRef id) Export a DBID as int.
int	EmptyDBIDs.binarySearch(DBIDRef key)
int	ArrayDBIDs.binarySearch(DBIDRef key) Search for the position of the given key, assuming that the data set is sorted.
static int	DBIDUtil.compare(DBIDRef id1, DBIDRef id2) Compare two DBIDs.
int	DBIDFactory.compare(DBIDRef a, DBIDRef b) Compare two DBIDs, for sorting.
int	DBID.compareTo(DBIDRef other) Compare two DBIDs for ordering.
boolean	EmptyDBIDs.contains(DBIDRef o)
boolean	DBIDs.contains(DBIDRef o) Test whether an ID is contained.
void	DBIDFactory.deallocateSingleDBID(DBIDRef id) Return a single DBID for reuse.
static DBID	DBIDUtil.deref(DBIDRef ref) Dereference a DBID reference.
static boolean	DBIDUtil.equal(DBIDRef id1, DBIDRef id2) Test two DBIDs for equality.
boolean	DBIDFactory.equal(DBIDRef a, DBIDRef b) Compare two DBIDs, for equality testing.
int	DBIDRange.getOffset(DBIDRef dbid) Get offset in the array for a particular DBID.
static <D extends Distance<D>> DistanceDBIDPair<D>	DBIDUtil.newDistancePair(D dist, DBIDRef id) Make a DistanceDBIDPair.
<D extends Distance<D>> DistanceDBIDPair<D>	DBIDFactory.newDistancePair(D val, DBIDRef id) Make a new distance-DBID pair.
static DoubleDistanceDBIDPair	DBIDUtil.newDistancePair(double dist, DBIDRef id) Make a DoubleDistanceDBIDPair.
DoubleDistanceDBIDPair	DBIDFactory.newDistancePair(double val, DBIDRef id) Make a new distance-DBID pair.
static DBIDPair	DBIDUtil.newPair(DBIDRef id1, DBIDRef id2) Make a DBID pair.
DBIDPair	DBIDFactory.newPair(DBIDRef id1, DBIDRef id2) Make a DBID pair from two existing DBIDs.
static DoubleDBIDPair	DBIDUtil.newPair(double val, DBIDRef id) Make a DoubleDBIDPair.
DoubleDBIDPair	DBIDFactory.newPair(double val, DBIDRef id) Make a double-DBID pair.
static DBIDVar	DBIDUtil.newVar(DBIDRef val) Make a new DBID variable.
DBIDVar	DBIDFactory.newVar(DBIDRef val) Make a new DBID variable.
boolean	ModifiableDBIDs.remove(DBIDRef id) Remove a single DBID from the collection.
void	DBIDVar.set(DBIDRef ref) Assign a new value for the reference.
DBID	ArrayModifiableDBIDs.set(int i, DBIDRef newval) Replace the i'th entry (starting at 0)
static String	DBIDUtil.toString(DBIDRef id) Format a DBID as string.
String	DBIDFactory.toString(DBIDRef id) Print a DBID as string.

Method parameters in de.lmu.ifi.dbs.elki.database.ids with type arguments of type DBIDRef

Modifier and Type	Method and Description
void	ArrayModifiableDBIDs.sort(Comparator<? super DBIDRef> comparator) Sort the DBID set.
void	ArrayModifiableDBIDs.sort(int start, int end, Comparator<? super DBIDRef> comparator) Sort the DBID set.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.ids.generic

Classes in de.lmu.ifi.dbs.elki.database.ids.generic that implement DBIDRef

Modifier and Type	Class and Description
class	DBIDIterAdapter Iterator for classic collections.
protected class	MaskedDBIDs.DBIDItr Iterator over set bits.
protected class	MaskedDBIDs.InvDBIDItr Iterator over set bits.
(package private) class	UnmodifiableArrayDBIDs.UnmodifiableDBIDArrayIter Make an existing DBIDMIter unmodifiable.
(package private) class	UnmodifiableDBIDs.UnmodifiableDBIDIter Make an existing DBIDMIter unmodifiable.

Methods in de.lmu.ifi.dbs.elki.database.ids.generic with parameters of type DBIDRef

Modifier and Type	Method and Description
int	UnmodifiableArrayDBIDs.binarySearch(DBIDRef key)
boolean	UnmodifiableArrayDBIDs.contains(DBIDRef o)
boolean	UnmodifiableDBIDs.contains(DBIDRef o)
boolean	MergedDBIDs.contains(DBIDRef o)
boolean	MaskedDBIDs.contains(DBIDRef o)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.ids.integer

Subinterfaces of DBIDRef in de.lmu.ifi.dbs.elki.database.ids.integer

Modifier and Type	Interface and Description
interface	IntegerDBIDArrayIter Modifiable integer array iterator.
interface	IntegerDBIDArrayMIter Modifiable integer array iterator.
interface	IntegerDBIDIter Iterator for integer DBIDs.
interface	IntegerDBIDMIter Modifiable iterator interface for integer DBIDs.
(package private) interface	IntegerDBIDRef DBID reference that references an integer value.

Classes in de.lmu.ifi.dbs.elki.database.ids.integer that implement DBIDRef

Modifier and Type	Class and Description
(package private) class	DistanceIntegerDBIDPair<D extends Distance<D>> Class storing a double distance a DBID.
(package private) class	DoubleDistanceIntegerDBIDPair Class storing a double distance a DBID.
protected class	IntArrayStaticDBIDs.DBIDItr DBID iterator in ELKI/C style.
(package private) class	IntegerDBID Database ID object.
protected class	IntegerDBID.DBIDItr Pseudo iterator for DBIDs interface.
protected static class	IntegerDBIDRange.DBIDItr Iterator in ELKI/C++ style.
(package private) class	IntegerDBIDVar Variable for storing a single DBID reference.
protected class	IntegerDBIDVar.DBIDItr Pseudo iterator for DBIDs interface.
(package private) class	IntegerDoubleDBIDPair Pair containing a double value and an integer DBID.
protected static class	TroveArrayDBIDs.DBIDItr Iterate over a Trove IntList, ELKI/C-style.
protected static class	TroveHashSetModifiableDBIDs.DBIDItr Iterator over trove hashs.
(package private) class	UnmodifiableIntegerArrayDBIDs.UnmodifiableDBIDIter Make an existing DBIDMIter unmodifiable.
(package private) class	UnmodifiableIntegerDBIDs.UnmodifiableDBIDIter Make an existing DBIDMIter unmodifiable.

Methods in de.lmu.ifi.dbs.elki.database.ids.integer that return DBIDRef

Modifier and Type	Method and Description
DBIDRef	SimpleDBIDFactory.invalid()
DBIDRef	TrivialDBIDFactory.invalid()

Methods in de.lmu.ifi.dbs.elki.database.ids.integer with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	TroveArrayModifiableDBIDs.add(DBIDRef e)
boolean	TroveHashSetModifiableDBIDs.add(DBIDRef e)
int	TroveArrayDBIDs.binarySearch(DBIDRef key)
int	IntArrayStaticDBIDs.binarySearch(DBIDRef key)
int	UnmodifiableIntegerArrayDBIDs.binarySearch(DBIDRef key)
int	IntegerDBID.binarySearch(DBIDRef key)
int	IntegerDBIDVar.binarySearch(DBIDRef key)
int	IntegerDBIDRange.binarySearch(DBIDRef key)
int	SimpleDBIDFactory.compare(DBIDRef a, DBIDRef b)
int	TrivialDBIDFactory.compare(DBIDRef a, DBIDRef b)
int	IntegerDBID.compareTo(DBIDRef o)
boolean	TroveArrayDBIDs.contains(DBIDRef o)
boolean	IntArrayStaticDBIDs.contains(DBIDRef o)
boolean	UnmodifiableIntegerDBIDs.contains(DBIDRef o)
boolean	UnmodifiableIntegerArrayDBIDs.contains(DBIDRef o)
boolean	IntegerDBID.contains(DBIDRef o)
boolean	IntegerDBIDVar.contains(DBIDRef o)
boolean	IntegerDBIDRange.contains(DBIDRef o)
boolean	TroveHashSetModifiableDBIDs.contains(DBIDRef o)
void	ReusingDBIDFactory.deallocateSingleDBID(DBIDRef id)
void	SimpleDBIDFactory.deallocateSingleDBID(DBIDRef id)
void	TrivialDBIDFactory.deallocateSingleDBID(DBIDRef id)
boolean	SimpleDBIDFactory.equal(DBIDRef a, DBIDRef b)
boolean	TrivialDBIDFactory.equal(DBIDRef a, DBIDRef b)
int	IntegerDBIDRange.getOffset(DBIDRef dbid) For storage array offsets.
int	IntegerDBIDRange.mapDBIDToOffset(DBIDRef dbid)
<D extends Distance<D>> DistanceDBIDPair<D>	SimpleDBIDFactory.newDistancePair(D val, DBIDRef id)
<D extends Distance<D>> DistanceDBIDPair<D>	TrivialDBIDFactory.newDistancePair(D val, DBIDRef id)
DoubleDistanceDBIDPair	SimpleDBIDFactory.newDistancePair(double val, DBIDRef id)
DoubleDistanceDBIDPair	TrivialDBIDFactory.newDistancePair(double val, DBIDRef id)
DBIDPair	SimpleDBIDFactory.newPair(DBIDRef first, DBIDRef second)
DBIDPair	TrivialDBIDFactory.newPair(DBIDRef first, DBIDRef second)
DoubleDBIDPair	SimpleDBIDFactory.newPair(double val, DBIDRef id)
DoubleDBIDPair	TrivialDBIDFactory.newPair(double val, DBIDRef id)
DBIDVar	SimpleDBIDFactory.newVar(DBIDRef val)
DBIDVar	TrivialDBIDFactory.newVar(DBIDRef val)
boolean	TroveArrayModifiableDBIDs.remove(DBIDRef o)
boolean	TroveHashSetModifiableDBIDs.remove(DBIDRef o)
void	IntegerDBIDVar.set(DBIDRef ref)
DBID	TroveArrayModifiableDBIDs.set(int index, DBIDRef element)
String	SimpleDBIDFactory.toString(DBIDRef id)
String	TrivialDBIDFactory.toString(DBIDRef id)

Method parameters in de.lmu.ifi.dbs.elki.database.ids.integer with type arguments of type DBIDRef

Modifier and Type	Method and Description
private static int	IntegerDBIDArrayQuickSort.compare(IntegerDBIDVar i1, int p1, IntegerDBIDVar i2, int p2, Comparator<? super DBIDRef> comp) Compare two elements.
private static void	IntegerDBIDArrayQuickSort.quickSort(int[] data, int start, int end, Comparator<? super DBIDRef> comp, IntegerDBIDVar vl, IntegerDBIDVar vk, IntegerDBIDVar vr) Actual recursive sort function.
void	TroveArrayModifiableDBIDs.sort(Comparator<? super DBIDRef> comparator)
static void	IntegerDBIDArrayQuickSort.sort(int[] data, Comparator<? super DBIDRef> comp) Sort the full array using the given comparator.
static void	IntegerDBIDArrayQuickSort.sort(int[] data, int start, int end, Comparator<? super DBIDRef> comp) Sort the array using the given comparator.
void	TroveArrayModifiableDBIDs.sort(int start, int end, Comparator<? super DBIDRef> comparator)

Constructors in de.lmu.ifi.dbs.elki.database.ids.integer with parameters of type DBIDRef

Constructor and Description
IntegerDBIDVar(DBIDRef val) Constructor.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.distance

Methods in de.lmu.ifi.dbs.elki.database.query.distance with parameters of type DBIDRef

Modifier and Type	Method and Description
D	PrimitiveDistanceQuery.distance(DBIDRef id1, DBIDRef id2)
D	DistanceQuery.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
abstract D	AbstractDistanceQuery.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
D	DBIDDistanceQuery.distance(DBIDRef id1, DBIDRef id2)
D	PrimitiveDistanceQuery.distance(DBIDRef id1, O o2)
D	AbstractDatabaseDistanceQuery.distance(DBIDRef id1, O o2)
D	DistanceQuery.distance(DBIDRef id1, O o2) Returns the distance between the two objects specified by their object ids.
abstract D	AbstractDistanceQuery.distance(DBIDRef id1, O o2) Returns the distance between the two objects specified by their object ids.
D	PrimitiveDistanceQuery.distance(O o1, DBIDRef id2)
D	AbstractDatabaseDistanceQuery.distance(O o1, DBIDRef id2)
D	DistanceQuery.distance(O o1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
abstract D	AbstractDistanceQuery.distance(O o1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
D	PrimitiveDistanceSimilarityQuery.similarity(DBIDRef id1, DBIDRef id2)
D	PrimitiveDistanceSimilarityQuery.similarity(DBIDRef id1, O o2)
D	PrimitiveDistanceSimilarityQuery.similarity(O o1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.knn

Methods in de.lmu.ifi.dbs.elki.database.query.knn with parameters of type DBIDRef

Modifier and Type	Method and Description
KNNResult<D>	KNNQuery.getKNNForDBID(DBIDRef id, int k) Get the k nearest neighbors for a particular id.
KNNResult<DoubleDistance>	LinearScanRawDoubleDistanceKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNResult<D>	PreprocessorKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNResult<D>	LinearScanKNNQuery.getKNNForDBID(DBIDRef id, int k)
abstract KNNResult<D>	AbstractDistanceKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNResult<D>	LinearScanPrimitiveDistanceKNNQuery.getKNNForDBID(DBIDRef id, int k)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.range

Methods in de.lmu.ifi.dbs.elki.database.query.range with parameters of type DBIDRef

Modifier and Type	Method and Description
DistanceDBIDResult<D>	LinearScanPrimitiveDistanceRangeQuery.getRangeForDBID(DBIDRef id, D range)
DistanceDBIDResult<D>	RangeQuery.getRangeForDBID(DBIDRef id, D range) Get the nearest neighbors for a particular id in a given query range
abstract DistanceDBIDResult<D>	AbstractDistanceRangeQuery.getRangeForDBID(DBIDRef id, D range)
DistanceDBIDResult<D>	LinearScanRangeQuery.getRangeForDBID(DBIDRef id, D range)
DistanceDBIDResult<DoubleDistance>	LinearScanRawDoubleDistanceRangeQuery.getRangeForDBID(DBIDRef id, DoubleDistance range)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.rknn

Methods in de.lmu.ifi.dbs.elki.database.query.rknn with parameters of type DBIDRef

Modifier and Type	Method and Description
DistanceDBIDResult<D>	LinearScanRKNNQuery.getRKNNForDBID(DBIDRef id, int k)
DistanceDBIDResult<D>	RKNNQuery.getRKNNForDBID(DBIDRef id, int k) Get the reverse k nearest neighbors for a particular id.
DistanceDBIDResult<D>	PreprocessorRKNNQuery.getRKNNForDBID(DBIDRef id, int k)
abstract DistanceDBIDResult<D>	AbstractRKNNQuery.getRKNNForDBID(DBIDRef id, int k)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.similarity

Methods in de.lmu.ifi.dbs.elki.database.query.similarity with parameters of type DBIDRef

Modifier and Type	Method and Description
D	SimilarityQuery.similarity(DBIDRef id1, DBIDRef id2) Returns the similarity between the two objects specified by their object ids.
D	PrimitiveSimilarityQuery.similarity(DBIDRef id1, DBIDRef id2)
abstract D	AbstractSimilarityQuery.similarity(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
D	SimilarityQuery.similarity(DBIDRef id1, O o2) Returns the similarity between the two objects specified by their object ids.
D	PrimitiveSimilarityQuery.similarity(DBIDRef id1, O o2)
abstract D	AbstractSimilarityQuery.similarity(DBIDRef id1, O o2) Returns the distance between the two objects specified by their object ids.
D	AbstractDBIDSimilarityQuery.similarity(DBIDRef id1, O o2)
D	SimilarityQuery.similarity(O o1, DBIDRef id2) Returns the similarity between the two objects specified by their object ids.
D	PrimitiveSimilarityQuery.similarity(O o1, DBIDRef id2)
abstract D	AbstractSimilarityQuery.similarity(O o1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
D	AbstractDBIDSimilarityQuery.similarity(O o1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.relation

Methods in de.lmu.ifi.dbs.elki.database.relation with parameters of type DBIDRef

Modifier and Type	Method and Description
void	ConvertToStringView.delete(DBIDRef id)
void	ProxyView.delete(DBIDRef id)
void	MaterializedRelation.delete(DBIDRef id) Delete an objects values.
void	DBIDView.delete(DBIDRef id)
void	ProjectedView.delete(DBIDRef id)
void	Relation.delete(DBIDRef id) Delete an objects values.
String	ConvertToStringView.get(DBIDRef id)
O	ProxyView.get(DBIDRef id)
O	MaterializedRelation.get(DBIDRef id)
DBID	DBIDView.get(DBIDRef id)
OUT	ProjectedView.get(DBIDRef id)
O	Relation.get(DBIDRef id) Get the representation of an object.
void	DBIDView.set(DBIDRef id, DBID val)
void	ProxyView.set(DBIDRef id, O val)
void	MaterializedRelation.set(DBIDRef id, O val)
void	Relation.set(DBIDRef id, O val) Set an object representation.
void	ProjectedView.set(DBIDRef id, OUT val)
void	ConvertToStringView.set(DBIDRef id, String val)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.distancefunction

Methods in de.lmu.ifi.dbs.elki.distance.distancefunction with parameters of type DBIDRef

Modifier and Type	Method and Description
abstract D	AbstractDBIDDistanceFunction.distance(DBIDRef o1, DBIDRef o2)
D	ProxyDistanceFunction.distance(DBIDRef o1, DBIDRef o2)
D	MinKDistance.Instance.distance(DBIDRef id1, DBIDRef id2)
DoubleDistance	SharedNearestNeighborJaccardDistanceFunction.Instance.distance(DBIDRef id1, DBIDRef id2)
D	DBIDDistanceFunction.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
DoubleDistance	LocallyWeightedDistanceFunction.Instance.distance(DBIDRef id1, DBIDRef id2) Computes the distance between two given real vectors according to this distance function.
DoubleDistance	RandomStableDistanceFunction.distance(DBIDRef o1, DBIDRef o2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.distancefunction.adapter

Methods in de.lmu.ifi.dbs.elki.distance.distancefunction.adapter with parameters of type DBIDRef

Modifier and Type	Method and Description
DoubleDistance	AbstractSimilarityAdapter.Instance.distance(DBIDRef id1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.distancefunction.correlation

Methods in de.lmu.ifi.dbs.elki.distance.distancefunction.correlation with parameters of type DBIDRef

Modifier and Type	Method and Description
PCACorrelationDistance	PCABasedCorrelationDistanceFunction.Instance.distance(DBIDRef id1, DBIDRef id2)
BitDistance	ERiCDistanceFunction.Instance.distance(DBIDRef id1, DBIDRef id2) Note, that the pca of o1 must have equal ore more strong eigenvectors than the pca of o2.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.distancefunction.external

Methods in de.lmu.ifi.dbs.elki.distance.distancefunction.external with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	NumberDistanceParser.containsKey(DBIDRef id1, DBIDRef id2, Map<DBIDPair,D> cache) Returns true if the specified distance cache contains a distance value for the specified ids.
DoubleDistance	FileBasedDoubleDistanceFunction.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their objects ids.
FloatDistance	FileBasedFloatDistanceFunction.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their objects ids.
DoubleDistance	DiskCacheBasedDoubleDistanceFunction.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their objects ids.
FloatDistance	DiskCacheBasedFloatDistanceFunction.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their objects ids.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.distancefunction.subspace

Methods in de.lmu.ifi.dbs.elki.distance.distancefunction.subspace with parameters of type DBIDRef

Modifier and Type	Method and Description
PreferenceVectorBasedCorrelationDistance	AbstractPreferenceVectorBasedCorrelationDistanceFunction.Instance.distance(DBIDRef id1, DBIDRef id2)
SubspaceDistance	LocalSubspaceDistanceFunction.Instance.distance(DBIDRef id1, DBIDRef id2) Note, that the pca of o1 must have equal ore more strong eigenvectors than the pca of o2.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.distanceresultlist

Subinterfaces of DBIDRef in de.lmu.ifi.dbs.elki.distance.distanceresultlist

Modifier and Type	Interface and Description
interface	DistanceDBIDResultIter<D extends Distance<D>> Iterator over distance-based query results.
interface	DoubleDistanceDBIDResultIter Iterator for double valued distance-based query results.

Classes in de.lmu.ifi.dbs.elki.distance.distanceresultlist that implement DBIDRef

Modifier and Type	Class and Description
protected class	DoubleDistanceDBIDList.Iter Iterator class.
private class	DoubleDistanceKNNList.Itr Iterator.
protected class	GenericDistanceDBIDList.Iter Iterator class.
private class	GenericKNNList.Itr Iterator.
private class	KNNUtil.KNNSubList.Itr Iterator for the sublist.

Methods in de.lmu.ifi.dbs.elki.distance.distanceresultlist with parameters of type DBIDRef

Modifier and Type	Method and Description
void	GenericKNNHeap.add(D distance, DBIDRef id)
void	KNNHeap.add(D distance, DBIDRef id) Add a distance-id pair to the heap unless the distance is too large.
void	GenericDistanceDBIDList.add(D dist, DBIDRef id)
void	ModifiableDistanceDBIDResult.add(D distance, DBIDRef id) Add an object to this result.
void	DoubleDistanceKNNHeap.add(double distance, DBIDRef id) Add a distance-id pair to the heap unless the distance is too large.
void	DoubleDistanceDBIDList.add(double dist, DBIDRef id) Add an element.
void	DoubleDistanceKNNHeap.add(Double distance, DBIDRef id) Add a distance-id pair to the heap unless the distance is too large.
void	DoubleDistanceKNNHeap.add(DoubleDistance dist, DBIDRef id) Deprecated. if you know your distances are double-valued, you should be using the primitive type.
void	DoubleDistanceDBIDList.add(DoubleDistance dist, DBIDRef id) Deprecated. Pass a double value instead.
boolean	GenericDistanceDBIDList.contains(DBIDRef o)
boolean	KNNUtil.KNNSubList.contains(DBIDRef o)
boolean	DoubleDistanceDBIDList.contains(DBIDRef o)
boolean	DoubleDistanceKNNList.contains(DBIDRef o)
boolean	GenericKNNList.contains(DBIDRef o)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.similarityfunction

Methods in de.lmu.ifi.dbs.elki.distance.similarityfunction with parameters of type DBIDRef

Modifier and Type	Method and Description
DoubleDistance	FractionalSharedNearestNeighborSimilarityFunction.Instance.similarity(DBIDRef id1, DBIDRef id2)
IntegerDistance	SharedNearestNeighborSimilarityFunction.Instance.similarity(DBIDRef id1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.evaluation.roc

Methods in de.lmu.ifi.dbs.elki.evaluation.roc that return types with arguments of type DBIDRef

Modifier and Type	Method and Description
Pair<D,DBIDRef>	ROC.DistanceResultAdapter.next()

Method parameters in de.lmu.ifi.dbs.elki.evaluation.roc with type arguments of type DBIDRef

Modifier and Type	Method and Description
static <C extends Comparable<? super C>> XYCurve	ROC.materializeROC(int size, SetDBIDs ids, Iterator<? extends PairInterface<C,? extends DBIDRef>> nei) Compute a ROC curve given a set of positive IDs and a sorted list of (comparable, ID)s, where the comparable object is used to decided when two objects are interchangeable.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index

Methods in de.lmu.ifi.dbs.elki.index with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	AbstractIndex.delete(DBIDRef id)
boolean	Index.delete(DBIDRef id) Deletes the specified object from this index.
KNNResult<D>	AbstractRefiningIndex.AbstractKNNQuery.getKNNForDBID(DBIDRef id, int k)
DistanceDBIDResult<D>	AbstractRefiningIndex.AbstractRangeQuery.getRangeForDBID(DBIDRef id, D range)
void	AbstractIndex.insert(DBIDRef id)
void	Index.insert(DBIDRef id) Inserts the specified object into this index.
protected D	AbstractRefiningIndex.AbstractRangeQuery.refine(DBIDRef id, O q) Refinement distance computation.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed

Methods in de.lmu.ifi.dbs.elki.index.preprocessed with parameters of type DBIDRef

Modifier and Type	Method and Description
P	LocalProjectionIndex.getLocalProjection(DBIDRef id) Get the precomputed local projection for a particular object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed.knn

Methods in de.lmu.ifi.dbs.elki.index.preprocessed.knn with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	MaterializeKNNPreprocessor.delete(DBIDRef id)
KNNResult<D>	AbstractMaterializeKNNPreprocessor.get(DBIDRef id) Get the k nearest neighbors.
GenericDistanceDBIDList<D>	MaterializeKNNAndRKNNPreprocessor.getRKNN(DBIDRef id) Returns the materialized RkNNs of the specified id.
void	MaterializeKNNPreprocessor.insert(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed.localpca

Methods in de.lmu.ifi.dbs.elki.index.preprocessed.localpca with parameters of type DBIDRef

Modifier and Type	Method and Description
PCAFilteredResult	AbstractFilteredPCAIndex.getLocalProjection(DBIDRef objid)
PCAFilteredResult	FilteredLocalPCAIndex.getLocalProjection(DBIDRef objid) Get the precomputed local PCA for a particular object ID.
protected abstract DistanceDBIDResult<DoubleDistance>	AbstractFilteredPCAIndex.objectsForPCA(DBIDRef id) Returns the objects to be considered within the PCA for the specified query object.
protected KNNResult<DoubleDistance>	KNNQueryFilteredPCAIndex.objectsForPCA(DBIDRef id)
protected DistanceDBIDResult<DoubleDistance>	RangeQueryFilteredPCAIndex.objectsForPCA(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed.preference

Methods in de.lmu.ifi.dbs.elki.index.preprocessed.preference with parameters of type DBIDRef

Modifier and Type	Method and Description
private BitSet	HiSCPreferenceVectorIndex.determinePreferenceVector(Relation<V> relation, DBIDRef id, DBIDs neighborIDs, StringBuilder msg) Determines the preference vector according to the specified neighbor ids.
BitSet	AbstractPreferenceVectorIndex.getPreferenceVector(DBIDRef objid)
BitSet	PreferenceVectorIndex.getPreferenceVector(DBIDRef id) Get the precomputed preference vector for a particular object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed.snn

Methods in de.lmu.ifi.dbs.elki.index.preprocessed.snn with parameters of type DBIDRef

Modifier and Type	Method and Description
ArrayDBIDs	SharedNearestNeighborIndex.getNearestNeighborSet(DBIDRef id) Get the precomputed nearest neighbors
ArrayDBIDs	SharedNearestNeighborPreprocessor.getNearestNeighborSet(DBIDRef objid)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed.subspaceproj

Methods in de.lmu.ifi.dbs.elki.index.preprocessed.subspaceproj with parameters of type DBIDRef

Modifier and Type	Method and Description
protected abstract P	AbstractSubspaceProjectionIndex.computeProjection(DBIDRef id, DistanceDBIDResult<D> neighbors, Relation<NV> relation) This method implements the type of variance analysis to be computed for a given point.
protected SubspaceProjectionResult	PreDeConSubspaceIndex.computeProjection(DBIDRef id, DistanceDBIDResult<D> neighbors, Relation<V> database)
protected PCAFilteredResult	FourCSubspaceIndex.computeProjection(DBIDRef id, DistanceDBIDResult<D> neighbors, Relation<V> database)
P	SubspaceProjectionIndex.getLocalProjection(DBIDRef objid) Get the precomputed local subspace for a particular object ID.
P	AbstractSubspaceProjectionIndex.getLocalProjection(DBIDRef objid)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees with parameters of type DBIDRef

Modifier and Type	Method and Description
abstract DistanceDBIDResult<D>	AbstractMkTree.reverseKNNQuery(DBIDRef id, int k) Performs a reverse k-nearest neighbor query for the given object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	MkAppTreeIndex.delete(DBIDRef id) Throws an UnsupportedOperationException since deletion of objects is not yet supported by an M-Tree.
void	MkAppTreeIndex.insert(DBIDRef id)
DistanceDBIDResult<D>	MkAppTree.reverseKNNQuery(DBIDRef id, int k) Performs a reverse k-nearest neighbor query for the given object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	MkCoPTreeIndex.delete(DBIDRef id) Throws an UnsupportedOperationException since deletion of objects is not yet supported by an M-Tree.
private void	MkCoPTree.doReverseKNNQuery(int k, DBIDRef q, GenericDistanceDBIDList<D> result, ModifiableDBIDs candidates) Performs a reverse knn query.
void	MkCoPTreeIndex.insert(DBIDRef id)
DistanceDBIDResult<D>	MkCoPTree.reverseKNNQuery(DBIDRef id, int k) Performs a reverse k-nearest neighbor query for the given object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	MkMaxTreeIndex.delete(DBIDRef id) Throws an UnsupportedOperationException since deletion of objects is not yet supported by an M-Tree.
private void	MkMaxTree.doReverseKNNQuery(DBIDRef q, MkMaxTreeNode<O,D> node, MkMaxEntry<D> node_entry, ModifiableDistanceDBIDResult<D> result) Performs a reverse k-nearest neighbor query in the specified subtree for the given query object with k = AbstractMkTreeUnified.k_max.
void	MkMaxTreeIndex.insert(DBIDRef id)
DistanceDBIDResult<D>	MkMaxTree.reverseKNNQuery(DBIDRef id, int k) Performs a reverse k-nearest neighbor query for the given object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	MkTabTreeIndex.delete(DBIDRef id) Throws an UnsupportedOperationException since deletion of objects is not yet supported by an M-Tree.
private void	MkTabTree.doReverseKNNQuery(int k, DBIDRef q, MkTabEntry<D> node_entry, MkTabTreeNode<O,D> node, GenericDistanceDBIDList<D> result) Performs a k-nearest neighbor query in the specified subtree for the given query object and the given parameter k.
void	MkTabTreeIndex.insert(DBIDRef id)
DistanceDBIDResult<D>	MkTabTree.reverseKNNQuery(DBIDRef id, int k)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	MTreeIndex.delete(DBIDRef id) Throws an UnsupportedOperationException since deletion of objects is not yet supported by an M-Tree.
void	MTreeIndex.insert(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.query

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.query with parameters of type DBIDRef

Modifier and Type	Method and Description
KNNResult<D>	MetricalIndexKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNResult<DoubleDistance>	DoubleDistanceMetricalIndexKNNQuery.getKNNForDBID(DBIDRef id, int k)
DistanceDBIDResult<D>	MetricalIndexRangeQuery.getRangeForDBID(DBIDRef id, D range)
DistanceDBIDResult<DoubleDistance>	DoubleDistanceMetricalIndexRangeQuery.getRangeForDBID(DBIDRef id, DoubleDistance range)
DistanceDBIDResult<D>	MkTreeRKNNQuery.getRKNNForDBID(DBIDRef id, int k)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants with parameters of type DBIDRef

Modifier and Type	Method and Description
protected IndexTreePath<E>	AbstractRStarTree.findPathToObject(IndexTreePath<E> subtree, SpatialComparable mbr, DBIDRef id) Returns the path to the leaf entry in the specified subtree that represents the data object with the specified mbr and id.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	DeLiCluTreeIndex.delete(DBIDRef id) Deletes the specified object from this index.
void	DeLiCluTreeIndex.insert(DBIDRef id) Inserts the specified real vector object into this index.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.query

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.query with parameters of type DBIDRef

Modifier and Type	Method and Description
DoubleDistanceKNNList	DoubleDistanceRStarTreeKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNResult<D>	GenericRStarTreeKNNQuery.getKNNForDBID(DBIDRef id, int k)
DistanceDBIDResult<D>	GenericRStarTreeRangeQuery.getRangeForDBID(DBIDRef id, D range)
DistanceDBIDResult<DoubleDistance>	DoubleDistanceRStarTreeRangeQuery.getRangeForDBID(DBIDRef id, DoubleDistance range)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar with parameters of type DBIDRef

Modifier and Type	Method and Description
protected SpatialPointLeafEntry	RStarTreeIndex.createNewLeafEntry(DBIDRef id) Create a new leaf entry.
boolean	RStarTreeIndex.delete(DBIDRef id) Deletes the specified object from this index.
void	RStarTreeIndex.insert(DBIDRef id) Inserts the specified reel vector object into this index.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.result

Methods in de.lmu.ifi.dbs.elki.result with parameters of type DBIDRef

Modifier and Type	Method and Description
int	OrderingFromDataStore.ImpliedComparator.compare(DBIDRef id1, DBIDRef id2)
int	OrderingFromDataStore.DerivedComparator.compare(DBIDRef id1, DBIDRef id2)
private StringBuilder	KMLOutputHandler.makeDescription(Collection<Relation<?>> relations, DBIDRef id) Make an HTML description.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.result.optics

Methods in de.lmu.ifi.dbs.elki.result.optics with parameters of type DBIDRef

Modifier and Type	Method and Description
void	ClusterOrderResult.ReachabilityDistanceAdapter.delete(DBIDRef id)
void	ClusterOrderResult.PredecessorAdapter.delete(DBIDRef id)
D	ClusterOrderResult.ReachabilityDistanceAdapter.get(DBIDRef objID)
DBID	ClusterOrderResult.PredecessorAdapter.get(DBIDRef objID)
void	ClusterOrderResult.ReachabilityDistanceAdapter.set(DBIDRef id, D val)
void	ClusterOrderResult.PredecessorAdapter.set(DBIDRef id, DBID val)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.result.outlier

Methods in de.lmu.ifi.dbs.elki.result.outlier with parameters of type DBIDRef

Modifier and Type	Method and Description
int	OrderingFromRelation.ImpliedComparator.compare(DBIDRef id1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.result.textwriter

Methods in de.lmu.ifi.dbs.elki.result.textwriter with parameters of type DBIDRef

Modifier and Type	Method and Description
private void	TextWriter.printObject(TextWriterStream out, Database db, DBIDRef objID, List<Relation<?>> ra)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.utilities.datastructures

Method parameters in de.lmu.ifi.dbs.elki.utilities.datastructures with type arguments of type DBIDRef

Modifier and Type	Method and Description
private static void	QuickSelect.insertionSort(ArrayModifiableDBIDs data, Comparator<? super DBIDRef> comparator, int start, int end) Sort a small array using repetitive insertion sort.
static DBID	QuickSelect.median(ArrayModifiableDBIDs data, Comparator<? super DBIDRef> comparator) Compute the median of an array efficiently using the QuickSelect method.
static DBID	QuickSelect.median(ArrayModifiableDBIDs data, Comparator<? super DBIDRef> comparator, int begin, int end) Compute the median of an array efficiently using the QuickSelect method.
static DBID	QuickSelect.quantile(ArrayModifiableDBIDs data, Comparator<? super DBIDRef> comparator, double quant) Compute the median of an array efficiently using the QuickSelect method.
static DBID	QuickSelect.quantile(ArrayModifiableDBIDs data, Comparator<? super DBIDRef> comparator, int begin, int end, double quant) Compute the median of an array efficiently using the QuickSelect method.
static DBID	QuickSelect.quickSelect(ArrayModifiableDBIDs data, Comparator<? super DBIDRef> comparator, int rank) QuickSelect is essentially quicksort, except that we only "sort" that half of the array that we are interested in.
static void	QuickSelect.quickSelect(ArrayModifiableDBIDs data, Comparator<? super DBIDRef> comparator, int start, int end, int rank) QuickSelect is essentially quicksort, except that we only "sort" that half of the array that we are interested in.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.style

Methods in de.lmu.ifi.dbs.elki.visualization.style with parameters of type DBIDRef

Modifier and Type	Method and Description
int	ClusterStylingPolicy.getColorForDBID(DBIDRef id)
int	StylingPolicy.getColorForDBID(DBIDRef id) Get the color for an individual object.
int	ClassStylingPolicy.getStyleForDBID(DBIDRef id) Get the style number for a particular object
int	ClusterStylingPolicy.getStyleForDBID(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.visualizers.pairsegments

Methods in de.lmu.ifi.dbs.elki.visualization.visualizers.pairsegments with parameters of type DBIDRef

Modifier and Type	Method and Description
int	SegmentsStylingPolicy.getColorForDBID(DBIDRef id)
int	SegmentsStylingPolicy.getStyleForDBID(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot

Methods in de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot with parameters of type DBIDRef

Modifier and Type	Method and Description
protected Element	TooltipScoreVisualization.Instance.makeTooltip(DBIDRef id, double x, double y, double dotsize)
protected abstract Element	AbstractTooltipVisualization.makeTooltip(DBIDRef id, double x, double y, double dotsize) Make a tooltip Element for this id.
protected Element	TooltipStringVisualization.Instance.makeTooltip(DBIDRef id, double x, double y, double dotsize)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.outlier

Methods in de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.outlier with parameters of type DBIDRef

Modifier and Type	Method and Description
protected double	BubbleVisualization.Instance.getScaledForId(DBIDRef id) Convenience method to apply scalings in the right order.

Uses of DBIDRef in tutorial.clustering

Methods in tutorial.clustering with parameters of type DBIDRef

Modifier and Type	Method and Description
protected void	SameSizeKMeansAlgorithm.transfer(WritableDataStore<SameSizeKMeansAlgorithm.Meta> metas, SameSizeKMeansAlgorithm.Meta meta, ModifiableDBIDs src, ModifiableDBIDs dst, DBIDRef id, Integer dstnum) Transfer a single element from one cluster to another.