Deprecated API

Contents

• Deprecated Classes
• Deprecated Methods
• Deprecated Constructors

Deprecated Classes

Class and Description
de.lmu.ifi.dbs.elki.evaluation.roc.ComputeROCCurve Renamed to OutlierROCCurve.
de.lmu.ifi.dbs.elki.datasource.parser.DoubleVectorLabelParser Use NumberVectorLabelParser instead, which defaults to DoubleVector.
de.lmu.ifi.dbs.elki.datasource.parser.FloatVectorLabelParser Use NumberVectorLabelParser instead, and use vector type FloatVector.
de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.IntervalConstraint Use two constraints instead.
de.lmu.ifi.dbs.elki.datasource.parser.SparseFloatVectorLabelParser Use SparseNumberVectorLabelParser instead!

Deprecated Methods

Method and Description
de.lmu.ifi.dbs.elki.distance.distanceresultlist.DoubleDistanceKNNHeap.add(DoubleDistance, DBIDRef) if you know your distances are double-valued, you should be using the primitive type.
de.lmu.ifi.dbs.elki.distance.distanceresultlist.DoubleDistanceDBIDList.add(DoubleDistance, DBIDRef) Pass a double value instead.
de.lmu.ifi.dbs.elki.math.spacefillingcurves.ZCurveTransformer.asBigInteger(NumberVector)
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.AbstractMkTree.batchNN(N, DBIDs, int) Change to use by-object NN lookups instead.
de.lmu.ifi.dbs.elki.logging.progress.StepProgress.beginStep(int, String)
de.lmu.ifi.dbs.elki.utilities.DatabaseUtil.dimensionality(Relation) Use RelationUtil.dimensionality(Relation) instead!
de.lmu.ifi.dbs.elki.database.ids.DBIDRef.equals(Object)
de.lmu.ifi.dbs.elki.database.ids.DBID.equals(Object)
de.lmu.ifi.dbs.elki.database.ids.integer.IntegerDBID.equals(Object)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ByteSerializer.fromByteBuffer(ByteBuffer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ShortSerializer.fromByteBuffer(ByteBuffer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.IntegerSerializer.fromByteBuffer(ByteBuffer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.LongSerializer.fromByteBuffer(ByteBuffer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.FloatSerializer.fromByteBuffer(ByteBuffer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.DoubleSerializer.fromByteBuffer(ByteBuffer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.VarintSerializer.fromByteBuffer(ByteBuffer)
de.lmu.ifi.dbs.elki.database.datastore.IntegerDataStore.get(DBIDRef) Use IntegerDataStore.intValue(de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
de.lmu.ifi.dbs.elki.database.datastore.DoubleDistanceDataStore.get(DBIDRef) Use DoubleDistanceDataStore.doubleValue(de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
de.lmu.ifi.dbs.elki.database.datastore.DoubleDataStore.get(DBIDRef) Use DoubleDataStore.doubleValue(de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
de.lmu.ifi.dbs.elki.database.datastore.DBIDDataStore.get(DBIDRef) Use DBIDDataStore.assignVar(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, de.lmu.ifi.dbs.elki.database.ids.DBIDVar) and a DBIDVar instead, to avoid boxing/unboxing cost.
de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDoubleDistanceStore.get(DBIDRef)
de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDIntegerStore.get(DBIDRef)
de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDoubleStore.get(DBIDRef)
de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayIntegerStore.get(DBIDRef)
de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDBIDStore.get(DBIDRef)
de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDoubleDistanceStore.get(DBIDRef)
de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDBIDStore.get(DBIDRef)
de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDoubleStore.get(DBIDRef)
de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.DoubleArrayAdapter.get(double[], int)
de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.FloatArrayAdapter.get(float[], int)
de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.NumberVectorAdapter.get(NumberVector, int)
de.lmu.ifi.dbs.elki.utilities.datastructures.AnyMap.get(Object) use AnyMap.get(Object, Class) or AnyMap.getGenerics(Object, Class) instead, for type safety!
de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.TDoubleListAdapter.get(TDoubleList, int)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ByteSerializer.getByteSize(Byte)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.DoubleSerializer.getByteSize(Double)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.FloatSerializer.getByteSize(Float)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.IntegerSerializer.getByteSize(Integer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.VarintSerializer.getByteSize(Integer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.LongSerializer.getByteSize(Long)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ShortSerializer.getByteSize(Short)
de.lmu.ifi.dbs.elki.database.ids.DoubleDistanceDBIDPair.getDistance() Would produce a DoubleDistance object. Use DoubleDistanceDBIDPair.doubleDistance() instead!
de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDPair.getDistance()
de.lmu.ifi.dbs.elki.distance.distanceresultlist.DoubleDistanceDBIDList.Iter.getDistance()
de.lmu.ifi.dbs.elki.distance.distanceresultlist.DoubleDistanceDBIDResultIter.getDistance() Use DoubleDistanceDBIDResultIter.doubleDistance() to avoid creating unnecessary objects.
de.lmu.ifi.dbs.elki.distance.distanceresultlist.DoubleDistanceKNNList.Itr.getDistance() use DoubleDistanceKNNList.Itr.doubleDistance()!
de.lmu.ifi.dbs.elki.index.tree.AbstractNode.getEntries() Using this method means an extra copy - usually at the cost of performance.
de.lmu.ifi.dbs.elki.index.tree.IndexTree.getFile()
de.lmu.ifi.dbs.elki.database.ids.DoubleDBIDPair.getFirst() Avoid autoboxing. Use DoubleDBIDPair.doubleValue()!
de.lmu.ifi.dbs.elki.database.ids.integer.IntegerDoubleDBIDPair.getFirst()
de.lmu.ifi.dbs.elki.utilities.datastructures.heap.DoublePriorityObject.getFirst()
de.lmu.ifi.dbs.elki.utilities.datastructures.heap.IntegerPriorityObject.getFirst()
de.lmu.ifi.dbs.elki.utilities.pairs.IntIntPair.getFirst() use pair.first to avoid boxing!
de.lmu.ifi.dbs.elki.utilities.pairs.DoubleIntPair.getFirst() use pair.first to avoid boxing!
de.lmu.ifi.dbs.elki.utilities.pairs.DoubleObjPair.getFirst() use pair.first to avoid boxing!
de.lmu.ifi.dbs.elki.utilities.pairs.DoubleDoublePair.getFirst() use pair.first to avoid boxing!
de.lmu.ifi.dbs.elki.utilities.pairs.IntDoublePair.getFirst() use pair.first to avoid boxing!
de.lmu.ifi.dbs.elki.distance.distanceresultlist.DoubleDistanceKNNHeap.getKNNDistance() if you know your distances are double-valued, you should be using the primitive type.
de.lmu.ifi.dbs.elki.distance.distanceresultlist.DoubleDistanceKNNList.getKNNDistance() use doubleKNNDistance()!
de.lmu.ifi.dbs.elki.database.ids.DoubleDBIDPair.getSecond() Avoid autoboxing! Use DBIDRef interface!
de.lmu.ifi.dbs.elki.database.ids.integer.IntegerDoubleDBIDPair.getSecond()
de.lmu.ifi.dbs.elki.utilities.pairs.IntIntPair.getSecond() use pair.first to avoid boxing!
de.lmu.ifi.dbs.elki.utilities.pairs.DoubleIntPair.getSecond() use pair.first to avoid boxing!
de.lmu.ifi.dbs.elki.utilities.pairs.DoubleDoublePair.getSecond() use pair.first to avoid boxing!
de.lmu.ifi.dbs.elki.utilities.pairs.IntDoublePair.getSecond() use pair.first to avoid boxing!
de.lmu.ifi.dbs.elki.visualization.svg.SVGPlot.getStyle() Contents will be overwritten by CSS class manager!
de.lmu.ifi.dbs.elki.data.NumberVector.getValue(int)
de.lmu.ifi.dbs.elki.data.SparseFloatVector.getValue(int)
de.lmu.ifi.dbs.elki.data.FloatVector.getValue(int)
de.lmu.ifi.dbs.elki.data.SparseDoubleVector.getValue(int)
de.lmu.ifi.dbs.elki.data.IntegerVector.getValue(int)
de.lmu.ifi.dbs.elki.data.DoubleVector.getValue(int)
de.lmu.ifi.dbs.elki.data.OneDimensionalDoubleVector.getValue(int)
de.lmu.ifi.dbs.elki.data.BitVector.getValue(int)
de.lmu.ifi.dbs.elki.math.linearalgebra.Vector.getValue(int)
de.lmu.ifi.dbs.elki.database.ids.DBIDRef.hashCode() Do not use this hash code. Some implementations will not offer stable hash codes!
de.lmu.ifi.dbs.elki.database.datastore.WritableDBIDDataStore.put(DBIDRef, DBID) Use WritableDBIDDataStore.putDBID(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDBIDStore.put(DBIDRef, DBID)
de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDBIDStore.put(DBIDRef, DBID)
de.lmu.ifi.dbs.elki.database.datastore.WritableDoubleDataStore.put(DBIDRef, Double) Use WritableDoubleDataStore.putDouble(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, double) instead, to avoid boxing/unboxing cost.
de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDoubleStore.put(DBIDRef, Double)
de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDoubleStore.put(DBIDRef, Double)
de.lmu.ifi.dbs.elki.database.datastore.WritableDoubleDistanceDataStore.put(DBIDRef, DoubleDistance) Use WritableDoubleDistanceDataStore.putDouble(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, double) instead, to avoid boxing/unboxing cost.
de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDoubleDistanceStore.put(DBIDRef, DoubleDistance)
de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDoubleDistanceStore.put(DBIDRef, DoubleDistance)
de.lmu.ifi.dbs.elki.database.datastore.WritableIntegerDataStore.put(DBIDRef, Integer) Use WritableIntegerDataStore.putInt(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, int) instead, to avoid boxing/unboxing cost.
de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDIntegerStore.put(DBIDRef, Integer)
de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayIntegerStore.put(DBIDRef, Integer)
de.lmu.ifi.dbs.elki.utilities.datastructures.histogram.DoubleArrayStaticHistogram.putData(double, double[]) use the explicit DoubleArrayStaticHistogram.increment(double, double[]) instead.
de.lmu.ifi.dbs.elki.utilities.datastructures.histogram.IntArrayStaticHistogram.putData(double, int[]) use the explicit IntArrayStaticHistogram.increment(double, int[]) instead.
de.lmu.ifi.dbs.elki.utilities.datastructures.histogram.LongArrayStaticHistogram.putData(double, long[]) use the explicit LongArrayStaticHistogram.increment(double, long[]) instead.
de.lmu.ifi.dbs.elki.logging.progress.IndefiniteProgress.setCompleted()
de.lmu.ifi.dbs.elki.logging.progress.StepProgress.setCompleted()
de.lmu.ifi.dbs.elki.visualization.batikutil.JSVGSynchronizedCanvas.setDocument(Document) Document cannot be synchronized - use JSVGSynchronizedCanvas.setPlot(de.lmu.ifi.dbs.elki.visualization.svg.SVGPlot) and a SVGPlot object!
de.lmu.ifi.dbs.elki.visualization.batikutil.JSVGSynchronizedCanvas.setSVGDocument(SVGDocument) Document cannot be synchronized - use JSVGSynchronizedCanvas.setPlot(de.lmu.ifi.dbs.elki.visualization.svg.SVGPlot) and a SVGPlot object!
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ByteSerializer.toByteBuffer(ByteBuffer, Byte)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.DoubleSerializer.toByteBuffer(ByteBuffer, Double)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.FloatSerializer.toByteBuffer(ByteBuffer, Float)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.IntegerSerializer.toByteBuffer(ByteBuffer, Integer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.VarintSerializer.toByteBuffer(ByteBuffer, Integer)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.LongSerializer.toByteBuffer(ByteBuffer, Long)
de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ShortSerializer.toByteBuffer(ByteBuffer, Short)

Deprecated Constructors

Constructor and Description
de.lmu.ifi.dbs.elki.distance.distancefunction.ArcCosineDistanceFunction() Use static instance!
de.lmu.ifi.dbs.elki.data.model.Bicluster(int[], int[], Relation) Use DBIDs, not integers!
de.lmu.ifi.dbs.elki.data.model.BiclusterWithInverted(int[], int[], Relation) Use DBIDs, not integer indexes!
de.lmu.ifi.dbs.elki.distance.distancefunction.CosineDistanceFunction() Use static instance
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.DoubleParameter(OptionID, boolean) Use AbstractParameter.setOptional(boolean) instead.
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.DoubleParameter(OptionID, double, ParameterConstraint) Use AbstractParameter.addConstraint(de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.ParameterConstraint<? super T>) instead.
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.DoubleParameter(OptionID, ParameterConstraint) Use AbstractParameter.addConstraint(de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.ParameterConstraint<? super T>) instead.
de.lmu.ifi.dbs.elki.distance.distancefunction.EuclideanDistanceFunction() Use static instance!
de.lmu.ifi.dbs.elki.logging.progress.FiniteProgress(String, int)
de.lmu.ifi.dbs.elki.distance.distancefunction.colorhistogram.HistogramIntersectionDistanceFunction() Use static instance
de.lmu.ifi.dbs.elki.logging.progress.IndefiniteProgress(String)
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.IntParameter(OptionID, boolean) Use AbstractParameter.setOptional(boolean) instead.
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.IntParameter(OptionID, int, ParameterConstraint) Use AbstractParameter.addConstraint(de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.ParameterConstraint<? super T>) instead.
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.IntParameter(OptionID, ParameterConstraint) Use AbstractParameter.addConstraint(de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.ParameterConstraint<? super T>) instead.
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.IntParameter(OptionID, ParameterConstraint, boolean) Use AbstractParameter.addConstraint(de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.ParameterConstraint<? super T>) instead.
de.lmu.ifi.dbs.elki.distance.distancefunction.JeffreyDivergenceDistanceFunction() Use static instance!
de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel.KernelMatrix(PrimitiveSimilarityFunction, Relation) ID mapping is not reliable!
de.lmu.ifi.dbs.elki.distance.distancefunction.geo.LatLngDistanceFunction()
de.lmu.ifi.dbs.elki.distance.distancefunction.geo.LngLatDistanceFunction()
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.LongParameter(OptionID, ParameterConstraint, long) Use AbstractParameter.addConstraint(de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.ParameterConstraint<? super T>) instead!
de.lmu.ifi.dbs.elki.distance.distancefunction.ManhattanDistanceFunction() Use static instance!
de.lmu.ifi.dbs.elki.distance.distancefunction.MaximumDistanceFunction() Use static instance!
de.lmu.ifi.dbs.elki.distance.distancefunction.MinimumDistanceFunction() Use static instance!
de.lmu.ifi.dbs.elki.datasource.bundle.MultipleObjectsBundle(BundleMeta, List>)
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation.PearsonCorrelationDistanceFunction() Use static instance!
de.lmu.ifi.dbs.elki.distance.distancefunction.SparseEuclideanDistanceFunction() Use static instance instead.
de.lmu.ifi.dbs.elki.distance.distancefunction.SparseManhattanDistanceFunction() Use static instance instead.
de.lmu.ifi.dbs.elki.distance.distancefunction.SparseMaximumDistanceFunction() Use static instance
de.lmu.ifi.dbs.elki.distance.distancefunction.SquaredEuclideanDistanceFunction() Use static instance!
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation.SquaredPearsonCorrelationDistanceFunction() use static instance!
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.StringParameter(OptionID, ParameterConstraint) Use AbstractParameter.addConstraint(de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.ParameterConstraint<? super T>) instead!
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.StringParameter(OptionID, ParameterConstraint, String) Use AbstractParameter.addConstraint(de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.ParameterConstraint<? super T>) instead!