A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _

R

ralpha - Variable in class de.lmu.ifi.dbs.elki.math.linearalgebra.pca.RelativeEigenPairFilter

The noise tolerance level for weak eigenvectors

RALPHA_PARAM - Variable in class de.lmu.ifi.dbs.elki.math.linearalgebra.pca.RelativeEigenPairFilter

Parameter relative alpha.

random - Variable in class de.lmu.ifi.dbs.elki.data.synthetic.bymodel.distribution.NormalDistribution

The random generator.

random - Variable in class de.lmu.ifi.dbs.elki.data.synthetic.bymodel.distribution.UniformDistribution

The random generator.

random - Variable in class de.lmu.ifi.dbs.elki.data.synthetic.bymodel.GeneratorSingleCluster

Random generator (used for initializing random generators)

random(int, int) - Static method in class de.lmu.ifi.dbs.elki.math.linearalgebra.Matrix

Generate matrix with random elements

random - Variable in class de.lmu.ifi.dbs.elki.parser.meta.RandomProjectionParser

Holds a random object.

RANDOM_SAMPLE_FLAG - Variable in class de.lmu.ifi.dbs.elki.algorithm.DependencyDerivator

Flag to use random sample (use knn query around centroid, if flag is not set).

randomBitSet(int, int, Random) - Static method in class de.lmu.ifi.dbs.elki.utilities.Util

Creates a new BitSet of fixed cardinality with randomly set bits.

RandomGeneratedReferencePoints<O extends NumberVector<O,?>> - Class in de.lmu.ifi.dbs.elki.utilities.referencepoints

Reference points generated randomly within the used data space.

RandomGeneratedReferencePoints(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.utilities.referencepoints.RandomGeneratedReferencePoints

Constructor, adhering to Parameterizable

randomInstance(Random) - Method in class de.lmu.ifi.dbs.elki.data.BitVector

Returns a BitVector with random values.

randomInstance(Bit, Bit, Random) - Method in class de.lmu.ifi.dbs.elki.data.BitVector

Returns the same as randomInstance(random).

randomInstance(BitVector, BitVector, Random) - Method in class de.lmu.ifi.dbs.elki.data.BitVector

Returns the same as randomInstance(random).

randomInstance(Random) - Method in class de.lmu.ifi.dbs.elki.data.DoubleVector

Returns a new DoubleVector with random values between 0 and 1.

randomInstance(Double, Double, Random) - Method in class de.lmu.ifi.dbs.elki.data.DoubleVector

randomInstance(DoubleVector, DoubleVector, Random) - Method in class de.lmu.ifi.dbs.elki.data.DoubleVector

randomInstance(Random) - Method in class de.lmu.ifi.dbs.elki.data.FloatVector

randomInstance(Float, Float, Random) - Method in class de.lmu.ifi.dbs.elki.data.FloatVector

randomInstance(FloatVector, FloatVector, Random) - Method in class de.lmu.ifi.dbs.elki.data.FloatVector

randomInstance(Random) - Method in interface de.lmu.ifi.dbs.elki.data.NumberVector

Returns a NumberVector of V with uniformly distributed (0-1) random values.

randomInstance(N, N, Random) - Method in interface de.lmu.ifi.dbs.elki.data.NumberVector

Returns a NumberVector of V with random values between min and max.

randomInstance(V, V, Random) - Method in interface de.lmu.ifi.dbs.elki.data.NumberVector

Returns a NumberVector of V with random values between min and max.

randomInstance(Random) - Method in class de.lmu.ifi.dbs.elki.data.SparseFloatVector

randomInstance(Float, Float, Random) - Method in class de.lmu.ifi.dbs.elki.data.SparseFloatVector

randomInstance(SparseFloatVector, SparseFloatVector, Random) - Method in class de.lmu.ifi.dbs.elki.data.SparseFloatVector

randomNormalizedVector(int) - Static method in class de.lmu.ifi.dbs.elki.math.linearalgebra.Vector

Returns a randomly created vector of length 1.0

RandomProjectionParser<V extends NumberVector<V,?>> - Class in de.lmu.ifi.dbs.elki.parser.meta

A RandomProjectionParser selects a subset of attributes randomly for projection of a ParsingResult.

RandomProjectionParser(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.parser.meta.RandomProjectionParser

Constructor, adhering to Parameterizable

randomSample(int, long) - Method in class de.lmu.ifi.dbs.elki.database.AbstractDatabase

randomSample(int, long) - Method in interface de.lmu.ifi.dbs.elki.database.Database

Returns a random sample of k ids.

RandomSampleReferencePoints<O extends NumberVector<O,?>> - Class in de.lmu.ifi.dbs.elki.utilities.referencepoints

Random-Sampling strategy for picking reference points.

RandomSampleReferencePoints(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.utilities.referencepoints.RandomSampleReferencePoints

Constructor, adhering to Parameterizable

RANDOMSEED_ID - Static variable in class de.lmu.ifi.dbs.elki.application.GeneratorXMLSpec

OptionID for GeneratorXMLSpec.RANDOMSEED_PARAM

RANDOMSEED_PARAM - Variable in class de.lmu.ifi.dbs.elki.application.GeneratorXMLSpec

Parameter to give the configuration file

rangeQuery(Integer, String, DistanceFunction<O, D>) - Method in interface de.lmu.ifi.dbs.elki.database.Database

Performs a range query for the given object ID with the given epsilon range and the according distance function.

rangeQuery(Integer, D, DistanceFunction<O, D>) - Method in interface de.lmu.ifi.dbs.elki.database.Database

Performs a range query for the given object ID with the given epsilon range and the according distance function.

rangeQuery(Integer, String, DistanceFunction<O, T>) - Method in class de.lmu.ifi.dbs.elki.database.MetricalIndexDatabase

rangeQuery(Integer, T, DistanceFunction<O, T>) - Method in class de.lmu.ifi.dbs.elki.database.MetricalIndexDatabase

rangeQuery(Integer, String, DistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.database.SequentialDatabase

rangeQuery(Integer, D, DistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.database.SequentialDatabase

rangeQuery(Integer, String, DistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.database.SpatialIndexDatabase

rangeQuery(Integer, D, DistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.database.SpatialIndexDatabase

rangeQuery(O, String) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.MetricalIndex

Performs a range query for the given object with the given epsilon range and the according distance function.

rangeQuery(O, D) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.MetricalIndex

Performs a range query for the given object with the given epsilon range and the according distance function.

rangeQuery(O, String) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.AbstractMTree

rangeQuery(O, D) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.AbstractMTree

rangeQuery(O, String, SpatialDistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.AbstractRStarTree

Performs a range query for the given spatial object with the given epsilon range and the according distance function.

rangeQuery(O, D, SpatialDistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.AbstractRStarTree

Performs a range query for the given spatial object with the given epsilon range and the according distance function.

rangeQuery(O, String, SpatialDistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialIndex

Performs a range query for the given object with the given epsilon range and the according distance function.

rangeQuery(O, D, SpatialDistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialIndex

Performs a range query for the given object with the given epsilon range and the according distance function.

RangeQueryBasedLocalPCAPreprocessor<V extends NumberVector<V,?>> - Class in de.lmu.ifi.dbs.elki.preprocessing

Provides the local neighborhood to be considered in the PCA as the neighbors within an epsilon range query of an object.

RangeQueryBasedLocalPCAPreprocessor(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.preprocessing.RangeQueryBasedLocalPCAPreprocessor

Constructor, adhering to Parameterizable

rangeQueryDistanceFunction - Variable in class de.lmu.ifi.dbs.elki.preprocessing.ProjectedDBSCANPreprocessor

The distance function for the variance analysis.

rank - Variable in class de.lmu.ifi.dbs.elki.math.linearalgebra.LinearEquationSystem

The rank of the coefficient matrix.

rank() - Method in class de.lmu.ifi.dbs.elki.math.linearalgebra.Matrix

Matrix rank

rank() - Method in class de.lmu.ifi.dbs.elki.math.linearalgebra.SingularValueDecomposition

Effective numerical matrix rank

RANKING_LIST - Static variable in class de.lmu.ifi.dbs.elki.database.AssociationID

The association id to associate a set of neighbors for use of the shared nearest neighbor similarity function.

RankingQualityHistogram<V extends DatabaseObject,D extends NumberDistance<D,?>> - Class in de.lmu.ifi.dbs.elki.algorithm.statistics

Evaluate a distance function with respect to kNN queries.

RankingQualityHistogram(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.algorithm.statistics.RankingQualityHistogram

Constructor, adhering to Parameterizable

ratio - Variable in class de.lmu.ifi.dbs.elki.application.visualization.KNNExplorer.ExplorerWindow

ratio - Variable in class de.lmu.ifi.dbs.elki.visualization.savedialog.SaveOptionsPanel

Ratio for easier size adjustment

RationalNumber - Class in de.lmu.ifi.dbs.elki.data

RationalNumber represents rational numbers in arbitrary precision.

RationalNumber(BigInteger, BigInteger) - Constructor for class de.lmu.ifi.dbs.elki.data.RationalNumber

Constructs a RationalNumber for a given numerator and denominator.

RationalNumber(long, long) - Constructor for class de.lmu.ifi.dbs.elki.data.RationalNumber

Constructs a RationalNumber for a given numerator and denominator.

RationalNumber(Double) - Constructor for class de.lmu.ifi.dbs.elki.data.RationalNumber

Constructs a RationalNumber out of the given double number.

RationalNumber(String) - Constructor for class de.lmu.ifi.dbs.elki.data.RationalNumber

Constructs a RationalNumber for a given String representing a double.

Rdiag - Variable in class de.lmu.ifi.dbs.elki.math.linearalgebra.QRDecomposition

Array for internal storage of diagonal of R.

RdKNNDirectoryEntry<D extends NumberDistance<D,N>,N extends Number> - Class in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn

Represents an entry in a directory node of an RdKNN-Tree.

RdKNNDirectoryEntry() - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNDirectoryEntry

Empty constructor for serialization purposes.

RdKNNDirectoryEntry(int, HyperBoundingBox, D) - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNDirectoryEntry

Constructs a new RDkNNDirectoryEntry object with the given parameters.

RdKNNEntry<D extends NumberDistance<D,N>,N extends Number> - Interface in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn

Defines the requirements for an entry in an RdKNN-Tree node.

RdKNNLeafEntry<D extends NumberDistance<D,N>,N extends Number> - Class in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn

Represents an entry in a leaf node of an RdKNN-Tree.

RdKNNLeafEntry() - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNLeafEntry

Empty constructor for serialization purposes.

RdKNNLeafEntry(int, double[], D) - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNLeafEntry

Constructs a new RDkNNLeafEntry object with the given parameters.

RdKNNNode<D extends NumberDistance<D,N>,N extends Number> - Class in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn

Represents a node in a RDkNN-Tree.

RdKNNNode() - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNNode

Empty constructor for Externalizable interface.

RdKNNNode(PageFile<RdKNNNode<D, N>>, int, boolean) - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNNode

Creates a new RdKNNNode object.

RdKNNTree<O extends NumberVector<O,?>,D extends NumberDistance<D,N>,N extends Number> - Class in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn

RDkNNTree is a spatial index structure based on the concepts of the R*-Tree supporting efficient processing of reverse k nearest neighbor queries.

RdKNNTree(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNTree

Constructor, adhering to Parameterizable

RdKNNTreeHeader - Class in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn

Encapsulates the header information of a RDkNN-Tree.

RdKNNTreeHeader() - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNTreeHeader

Empty constructor for serialization.

RdKNNTreeHeader(int, int, int, int, int, int) - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNTreeHeader

Creates a new header with the specified parameters.

reachability - Variable in class de.lmu.ifi.dbs.elki.result.ClusterOrderEntry

The reachability of the entry.

REACHABILITY_DISTANCE_FUNCTION_ID - Static variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.LOF

OptionID for LOF.REACHABILITY_DISTANCE_FUNCTION_PARAM

REACHABILITY_DISTANCE_FUNCTION_PARAM - Variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.LOF

The distance function to determine the reachability distance between database objects.

REACHABILITY_ID - Static variable in class de.lmu.ifi.dbs.elki.result.ClusterOrderResult

Association ID for reachability distance.

reachabilityDistanceFunction - Variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.LOF

Holds the instance of the reachability distance function specified by LOF.REACHABILITY_DISTANCE_FUNCTION_PARAM.

read(BufferedReader) - Static method in class de.lmu.ifi.dbs.elki.math.linearalgebra.Matrix

Read a matrix from a stream.

readAccess - Variable in class de.lmu.ifi.dbs.elki.persistent.PageFile

The read I/O-Access of this file.

readDouble(byte[], int) - Static method in class de.lmu.ifi.dbs.elki.utilities.ByteArrayUtil

Read a double from the byte array at the given offset.

readEmptyPages(RandomAccessFile) - Method in class de.lmu.ifi.dbs.elki.index.tree.TreeIndexHeader

Read the empty pages from the end of file.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.distance.BitDistance

Reads the bit value of this BitDistance from the specified stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.distance.CorrelationDistance

Reads the correlation value and the euclidean value of this CorrelationDistance from the specified stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.distance.DoubleDistance

Reads the double value of this DoubleDistance from the specified stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.distance.FloatDistance

Reads the float value of this FloatDistance from the specified stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.distance.IntegerDistance

Reads the integer value of this IntegerDistance from the specified stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.distance.PreferenceVectorBasedCorrelationDistance

Calls CorrelationDistance.readExternal(java.io.ObjectInput) and reads additionally the dimensionality and each Byte of the common preference vector from the specified stream..

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.distance.SubspaceDistance

Reads the subspace distance value and the affine distance value of this SubspaceDistance from the specified stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.AbstractEntry

Restores the id of the object (node or data object) that is represented by this entry from the specified stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.AbstractNode

Reads the id of this node, the numEntries and the entries array from the specified stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp.MkAppDirectoryEntry

Calls the super method and reads the the polynomial approximation of the knn distances of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp.MkAppLeafEntry

Calls the super method and reads the the polynomial approximation of the knn distances of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp.PolynomialApproximation

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop.ApproximationLine

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop.MkCoPDirectoryEntry

Calls the super method and reads the the conservative approximation of the knn distances of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop.MkCoPLeafEntry

Calls the super method and reads the the conservative and progressive approximation of the knn distances of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax.MkMaxDirectoryEntry

Calls the super method and reads the knn distance of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax.MkMaxLeafEntry

Calls the super method and reads the knn distance of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab.MkTabDirectoryEntry

Calls the super method and reads the parameter k_max and knn distance of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab.MkTabLeafEntry

Calls the super method and reads the parameter k_max and knn distance of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.MTreeDirectoryEntry

Calls the super method and reads the routingObjectID, the parentDistance and the coveringRadius of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.MTreeLeafEntry

Calls the super method and reads the parentDistance of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.AbstractRStarTreeNode

Reads the id of this node, the numEntries and the entries array from the specified stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNDirectoryEntry

Calls the super method and reads the knn distance of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNLeafEntry

Calls the super method and reads the knn distance of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialDirectoryEntry

Calls the super method and reads the MBR object of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialLeafEntry

Calls the super method and reads the values of this entry from the specified input stream.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.persistent.AbstractPage

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.utilities.heap.Deap

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.utilities.heap.DefaultIdentifiable

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays.

readExternal(ObjectInput) - Method in class de.lmu.ifi.dbs.elki.utilities.HyperBoundingBox

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays.

readExtraHeader() - Method in class de.lmu.ifi.dbs.elki.persistent.OnDiskArray

Read the extra header data.

readFloat(byte[], int) - Static method in class de.lmu.ifi.dbs.elki.utilities.ByteArrayUtil

Read a float from the byte array at the given offset.

readHeader(RandomAccessFile) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.MkTreeHeader

Initializes this header from the specified file.

readHeader(RandomAccessFile) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNTreeHeader

Initializes this header from the specified file.

readHeader(RandomAccessFile) - Method in class de.lmu.ifi.dbs.elki.index.tree.TreeIndexHeader

Initializes this header from the specified file.

readHeader(RandomAccessFile) - Method in class de.lmu.ifi.dbs.elki.persistent.DefaultPageHeader

Initializes this header from the specified file.

readHeader(byte[]) - Method in class de.lmu.ifi.dbs.elki.persistent.DefaultPageHeader

Initializes this header from the given Byte array.

readHeader(RandomAccessFile) - Method in interface de.lmu.ifi.dbs.elki.persistent.PageHeader

Initializes this header from the specified file.

readHeader(byte[]) - Method in interface de.lmu.ifi.dbs.elki.persistent.PageHeader

Initializes this header from the specified file.

readInt(byte[], int) - Static method in class de.lmu.ifi.dbs.elki.utilities.ByteArrayUtil

Read an integer from the byte array at the given offset.

readLong(byte[], int) - Static method in class de.lmu.ifi.dbs.elki.utilities.ByteArrayUtil

Read a long from the byte array at the given offset.

readPage(int) - Method in class de.lmu.ifi.dbs.elki.persistent.MemoryPageFile

Reads the page with the given id from this file.

readPage(int) - Method in class de.lmu.ifi.dbs.elki.persistent.OnDiskArrayPageFile

Reads the page with the given id from this file.

readPage(int) - Method in class de.lmu.ifi.dbs.elki.persistent.PageFile

Reads the page with the given id from this file.

readPage(int) - Method in class de.lmu.ifi.dbs.elki.persistent.PersistentPageFile

Reads the page with the given id from this file.

readRecord(int) - Method in class de.lmu.ifi.dbs.elki.persistent.OnDiskArray

Read a single record from the file.

readRecord(int, int) - Method in class de.lmu.ifi.dbs.elki.persistent.OnDiskUpperTriangleMatrix

Get data from the matrix

readResolve() - Method in class de.lmu.ifi.dbs.elki.utilities.ConstantObject

Method for use by the serialization mechanism to ensure identity of ConstantObjects.

readShort(byte[], int) - Static method in class de.lmu.ifi.dbs.elki.utilities.ByteArrayUtil

Read a short from the byte array at the given offset.

readUnsignedShort(byte[], int) - Static method in class de.lmu.ifi.dbs.elki.utilities.ByteArrayUtil

Read an unsigned short from the byte array at the given offset.

recalcViewbox() - Method in class de.lmu.ifi.dbs.elki.visualization.gui.overview.OverviewPlot

Recompute the view box of the plot.

recDrawEdges(SVGPath, DoubleDoublePair, ArrayList<DoubleDoublePair>, int, BitSet) - Method in class de.lmu.ifi.dbs.elki.visualization.visualizers.vis2d.TreeMBRVisualizer

reconfig - Variable in class de.lmu.ifi.dbs.elki.visualization.visualizers.adapter.DefaultAdapter

Track parameters for subclasses for "replay".

reconfig - Variable in class de.lmu.ifi.dbs.elki.visualization.visualizers.adapter.OutlierScoreAdapter

Track parameters for subclasses for "replay".

reconfigureLogging(String, String) - Static method in class de.lmu.ifi.dbs.elki.logging.LoggingConfiguration

Reconfigure logging.

recordsize - Variable in class de.lmu.ifi.dbs.elki.persistent.OnDiskArray

Size of the records in the file.

RedrawListener - Interface in de.lmu.ifi.dbs.elki.visualization.visualizers

Listener for Redraw events.

reducedRowEchelonForm - Variable in class de.lmu.ifi.dbs.elki.math.linearalgebra.LinearEquationSystem

Indicates if linear equation system is in reduced row echelon form.

reducedRowEchelonForm(int) - Method in class de.lmu.ifi.dbs.elki.math.linearalgebra.LinearEquationSystem

Brings this linear equation system into reduced row echelon form with choice of pivot method.

Reference - Annotation Type in de.lmu.ifi.dbs.elki.utilities.documentation

Annotation to specify a reference.

REFERENCE_DISTANCE_FUNCTION_ID - Static variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.LoOP

OptionID for LoOP.REFERENCE_DISTANCE_FUNCTION_PARAM

REFERENCE_DISTANCE_FUNCTION_PARAM - Variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.LoOP

The distance function to determine the reachability distance between database objects.

REFERENCE_POINTS - Static variable in interface de.lmu.ifi.dbs.elki.visualization.style.StyleLibrary

Reference points color and size

ReferenceBasedOutlierDetection<V extends NumberVector<V,N>,N extends Number> - Class in de.lmu.ifi.dbs.elki.algorithm.outlier

provides the Reference-Based Outlier Detection algorithm, an algorithm that computes kNN distances approximately, using reference points.

ReferenceBasedOutlierDetection(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.algorithm.outlier.ReferenceBasedOutlierDetection

Constructor, adhering to Parameterizable

ReferencePointsAdapter<NV extends NumberVector<NV,?>> - Class in de.lmu.ifi.dbs.elki.visualization.visualizers.adapter

Adapter to generate a reference points visualizer when reference points were found in the data.

ReferencePointsAdapter() - Constructor for class de.lmu.ifi.dbs.elki.visualization.visualizers.adapter.ReferencePointsAdapter

Constructor.

ReferencePointsHeuristic<O extends NumberVector<O,?>> - Interface in de.lmu.ifi.dbs.elki.utilities.referencepoints

Simple Interface for an heuristic to pick reference points.

ReferencePointsResult<O> - Class in de.lmu.ifi.dbs.elki.result

Result used in passing the reference points to the visualizers.

ReferencePointsResult(Collection<O>) - Constructor for class de.lmu.ifi.dbs.elki.result.ReferencePointsResult

Constructor with collection only.

ReferencePointsResult(Collection<O>, Collection<String>) - Constructor for class de.lmu.ifi.dbs.elki.result.ReferencePointsResult

Full constructor.

referencePointsVisualizer - Variable in class de.lmu.ifi.dbs.elki.visualization.visualizers.adapter.ReferencePointsAdapter

Prototype for parameterization

ReferencePointsVisualizer<NV extends NumberVector<NV,?>> - Class in de.lmu.ifi.dbs.elki.visualization.visualizers.vis2d

Generates a SVG-Element visualizing reference points.

ReferencePointsVisualizer() - Constructor for class de.lmu.ifi.dbs.elki.visualization.visualizers.vis2d.ReferencePointsVisualizer

REFOD_SCORE - Static variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.ReferenceBasedOutlierDetection

The association id to associate the REFOD_SCORE of an object for the Reference based outlier detection algorithm.

refp - Variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.ReferenceBasedOutlierDetection

Stores the reference point strategy

REFP_ID - Static variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.ReferenceBasedOutlierDetection

OptionID for ReferenceBasedOutlierDetection.REFP_PARAM

REFP_PARAM - Variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.ReferenceBasedOutlierDetection

Parameter for the reference points heuristic.

REFPOINT - Static variable in class de.lmu.ifi.dbs.elki.visualization.visualizers.vis2d.ReferencePointsVisualizer

Generic tag to indicate the type of element.

refresh() - Method in class de.lmu.ifi.dbs.elki.visualization.gui.overview.OverviewPlot

Do a refresh (when visibilities have changed).

reinitialize() - Method in class de.lmu.ifi.dbs.elki.visualization.gui.overview.OverviewPlot

Refresh the overview plot.

reInsert(N, int, TreeIndexPath<E>) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.AbstractRStarTree

Reinserts the specified node at the specified level.

reinsertExpanded(SpatialDistanceFunction<O, D>, DeLiCluTree<O>, List<TreeIndexPathComponent<DeLiCluEntry>>, AnnotationResult<KNNList<D>>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.DeLiClu

Reinserts the objects of the already expanded nodes.

reinsertExpanded(SpatialDistanceFunction<O, D>, DeLiCluTree<O>, List<TreeIndexPathComponent<DeLiCluEntry>>, int, SpatialEntry, AnnotationResult<KNNList<D>>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.DeLiClu

reinsertions - Variable in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.AbstractRStarTree

Contains a boolean for each level of this R*-Tree that indicates if there was already a reinsert operation in this level during the current insert / delete operation.

relativeCubicTo(double, double, double, double, double, double) - Method in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPath

Cubic Bezier line to the given relative coordinates.

RelativeEigenPairFilter - Class in de.lmu.ifi.dbs.elki.math.linearalgebra.pca

The RelativeEigenPairFilter sorts the eigenpairs in descending order of their eigenvalues and marks the first eigenpairs who are a certain factor above the average of the remaining eigenvalues.

RelativeEigenPairFilter(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.math.linearalgebra.pca.RelativeEigenPairFilter

Constructor, adhering to Parameterizable

relativeHorizontalLineTo(double) - Method in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPath

Draw a horizontal line to the given relative x coordinate.

relativeLineTo(double, double) - Method in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPath

Draw a line to the given relative coordinates.

relativeMoveTo(double, double) - Method in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPath

Move to the given relative coordinates.

relativeQuadTo(double, double, double, double) - Method in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPath

Quadratic Bezier line to the given relative coordinates.

relativeSmoothCubicTo(double, double, double, double) - Method in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPath

Smooth Cubic Bezier line to the given relative coordinates.

relativeSmoothQuadTo(double, double) - Method in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPath

Smooth quadratic Bezier line to the given relative coordinates.

relativeVerticalLineTo(double) - Method in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPath

Draw a vertical line to the given relative y coordinate.

REMAINING_OPTIONS_ID - Static variable in class de.lmu.ifi.dbs.elki.gui.util.DynamicParameters

OptionID for unrecognized options.

remove() - Method in class de.lmu.ifi.dbs.elki.evaluation.roc.ROC.DistanceResultAdapter

remove() - Method in class de.lmu.ifi.dbs.elki.evaluation.roc.ROC.SimpleAdapter

remove(String) - Method in class de.lmu.ifi.dbs.elki.gui.util.SavedSettingsFile

Remove a given key from the file.

remove() - Method in class de.lmu.ifi.dbs.elki.math.ReplacingHistogram.Iter

remove(int) - Method in interface de.lmu.ifi.dbs.elki.persistent.Cache

Removes an object from this cache.

remove(int) - Method in class de.lmu.ifi.dbs.elki.persistent.LRUCache

Removes a page from this cache.

remove() - Method in class de.lmu.ifi.dbs.elki.properties.IterateKnownImplementations

Removals are not supported by this iterator.

remove(K, V) - Method in class de.lmu.ifi.dbs.elki.utilities.HashMapList

Remove a single value from the map.

remove() - Method in class de.lmu.ifi.dbs.elki.utilities.InspectionUtil.DirClassIterator

remove() - Method in class de.lmu.ifi.dbs.elki.utilities.InspectionUtil.JarClassIterator

remove() - Method in class de.lmu.ifi.dbs.elki.utilities.IterableIteratorAdapter

remove() - Method in class de.lmu.ifi.dbs.elki.utilities.referencepoints.FullDatabaseReferencePoints.DatabaseProxy.ProxyIterator

remove() - Method in class de.lmu.ifi.dbs.elki.utilities.Util.MaskedArrayList.InvItr

remove() - Method in class de.lmu.ifi.dbs.elki.utilities.Util.MaskedArrayList.Itr

remove() - Method in class de.lmu.ifi.dbs.elki.utilities.xml.XMLNodeIterator

Removal: unsupported operation.

remove() - Method in class de.lmu.ifi.dbs.elki.utilities.xml.XMLNodeListIterator

Removal: unsupported operation.

removeClass(CSSClass) - Method in class de.lmu.ifi.dbs.elki.visualization.css.CSSClassManager

Remove a single CSS class from the map.

removeCompleted() - Method in class de.lmu.ifi.dbs.elki.logging.progress.ProgressTracker

Remove completed progresses.

RemoveCSSClass - Class in de.lmu.ifi.dbs.elki.visualization.batikutil

Remove a CSS class to the event target.

RemoveCSSClass(String) - Constructor for class de.lmu.ifi.dbs.elki.visualization.batikutil.RemoveCSSClass

Constructor

removeCSSClass(Element, String) - Static method in class de.lmu.ifi.dbs.elki.visualization.svg.SVGUtil

Remove a CSS class from an Element.

removeDatabaseListener(DatabaseListener) - Method in class de.lmu.ifi.dbs.elki.database.AbstractDatabase

Removes a listener previously added with addTreeModelListener.

removeDatabaseListener(DatabaseListener) - Method in interface de.lmu.ifi.dbs.elki.database.Database

Removes a listener previously added with addTreeModelListener.

removeIDs(Set<Integer>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.cash.CASHInterval

Removes the specified ids from this interval.

removeMin() - Method in class de.lmu.ifi.dbs.elki.utilities.heap.DefaultHeap

Removes and returns the minimum node from this heap and restores the heap.

removeRedrawListener(RedrawListener) - Method in class de.lmu.ifi.dbs.elki.visualization.visualizers.AbstractVisualizer

Remove a redraw listener to the visualizer.

removeRedrawListener(RedrawListener) - Method in interface de.lmu.ifi.dbs.elki.visualization.visualizers.Visualizer

Remove a redraw listener to the visualizer.

removeStatement(String) - Method in class de.lmu.ifi.dbs.elki.visualization.css.CSSClass

Remove a CSS statement.

reorderAxesTransformation(int, int[]) - Static method in class de.lmu.ifi.dbs.elki.math.linearalgebra.AffineTransformation

Generate a transformation that reorders axes in the given way.

replace(double, T) - Method in class de.lmu.ifi.dbs.elki.math.FlexiHistogram

replace(double, T) - Method in class de.lmu.ifi.dbs.elki.math.ReplacingHistogram

Put data at a given coordinate.

replaceDefaultHandler(Handler) - Static method in class de.lmu.ifi.dbs.elki.logging.LoggingConfiguration

Replace the default log handler with the given log handler.

ReplacingHistogram<T> - Class in de.lmu.ifi.dbs.elki.math

Class to manage a simple Histogram.

ReplacingHistogram(int, double, double, ReplacingHistogram.Adapter<T>) - Constructor for class de.lmu.ifi.dbs.elki.math.ReplacingHistogram

Histogram constructor

ReplacingHistogram(int, double, double) - Constructor for class de.lmu.ifi.dbs.elki.math.ReplacingHistogram

Histogram constructor without 'Constructor' to generate new elements.

ReplacingHistogram.Adapter<T> - Class in de.lmu.ifi.dbs.elki.math

Interface to plug in a data type T.

ReplacingHistogram.Adapter() - Constructor for class de.lmu.ifi.dbs.elki.math.ReplacingHistogram.Adapter

ReplacingHistogram.Iter - Class in de.lmu.ifi.dbs.elki.math

Iterator class to iterate over all bins.

ReplacingHistogram.Iter() - Constructor for class de.lmu.ifi.dbs.elki.math.ReplacingHistogram.Iter

replot() - Method in class de.lmu.ifi.dbs.elki.visualization.opticsplot.OPTICSPlot

Trigger a redraw of the OPTICS plot

reportError(ParameterException) - Method in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.AbstractParameterization

Report a configuration error.

reportError(ParameterException) - Method in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.ChainedParameterization

Report a configuration error.

reportError(ParameterException) - Method in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.MergedParameterization

reportError(ParameterException) - Method in interface de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.Parameterization

Report a configuration error.

reportError(ParameterException) - Method in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.TrackParameters

reportError(ParameterException) - Method in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.UnParameterization

reportErrors(SerializedParameterization) - Method in class de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI

Report errors in a single error log record.

reportInternalParameterizationErrors(Parameterization) - Method in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.AbstractParameterization

Report the internal parameterization errors to another parameterization

representations - Variable in class de.lmu.ifi.dbs.elki.data.MultiRepresentedObject

Holds the different representations of this object.

requestRedraw() - Method in class de.lmu.ifi.dbs.elki.visualization.visualizers.AbstractVisualizer

Request a redraw Note: this method may be overwritten by subclasses for custom redraw handling, or called by other classes when they know the underlying data has changed.

requiredInputPattern() - Method in class de.lmu.ifi.dbs.elki.distance.AbstractDistance

requiredInputPattern() - Method in interface de.lmu.ifi.dbs.elki.distance.Distance

Returns a String as description of the required input format.

res - Variable in class de.lmu.ifi.dbs.elki.visualization.scales.LinearScale

Scale resolution

resetIOAccess() - Method in class de.lmu.ifi.dbs.elki.utilities.heap.PersistentHeap

Resets the I/O-Access of this heap.

resetPageAccess() - Method in class de.lmu.ifi.dbs.elki.database.IndexDatabase

Resets the page -access of this database.

resetPageAccess() - Method in interface de.lmu.ifi.dbs.elki.index.Index

Resets the three counters for page access, i.e., the counters for physical read and write access, and the counter for logical page access.

resetPageAccess() - Method in class de.lmu.ifi.dbs.elki.index.tree.TreeIndex

resetPageAccess() - Method in interface de.lmu.ifi.dbs.elki.persistent.Cache

Resets the pages access of this cache.

resetPageAccess() - Method in class de.lmu.ifi.dbs.elki.persistent.LRUCache

Resets the pages access of this cache.

resetPageAccess() - Method in class de.lmu.ifi.dbs.elki.persistent.PageFile

Resets the counters for page accesses of this file and flushes the cache.

resetSizeButton - Variable in class de.lmu.ifi.dbs.elki.visualization.savedialog.SaveOptionsPanel

resizeFile(int) - Method in class de.lmu.ifi.dbs.elki.persistent.OnDiskArray

Resize file to the intended size

resizeMatrix(int) - Method in class de.lmu.ifi.dbs.elki.persistent.OnDiskUpperTriangleMatrix

Resize the matrix to cover newsize x newsize.

restore(V) - Method in class de.lmu.ifi.dbs.elki.normalization.AttributeWiseMinMaxNormalization

restore(List<V>) - Method in class de.lmu.ifi.dbs.elki.normalization.AttributeWiseMinMaxNormalization

restore(int, double) - Method in class de.lmu.ifi.dbs.elki.normalization.AttributeWiseVarianceNormalization

restore(V) - Method in class de.lmu.ifi.dbs.elki.normalization.AttributeWiseVarianceNormalization

restore(List<V>) - Method in class de.lmu.ifi.dbs.elki.normalization.AttributeWiseVarianceNormalization

restore(List<O>) - Method in class de.lmu.ifi.dbs.elki.normalization.DummyNormalization

restore(O) - Method in class de.lmu.ifi.dbs.elki.normalization.DummyNormalization

restore(List<MultiRepresentedObject<O>>) - Method in class de.lmu.ifi.dbs.elki.normalization.MultiRepresentedObjectNormalization

Transforms a set of feature vectors to the original attribute ranges.

restore(MultiRepresentedObject<O>) - Method in class de.lmu.ifi.dbs.elki.normalization.MultiRepresentedObjectNormalization

Transforms a feature vector to the original attribute ranges.

restore(List<O>) - Method in interface de.lmu.ifi.dbs.elki.normalization.Normalization

Transforms a set of feature vectores to the original attribute ranges.

restore(O) - Method in interface de.lmu.ifi.dbs.elki.normalization.Normalization

Transforms a feature vector to the original attribute ranges.

restoreID(Integer) - Method in class de.lmu.ifi.dbs.elki.database.AbstractDatabase

Makes the given id reusable for new insertion operations.

restrictionClass - Variable in class de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints.GlobalDistanceFunctionPatternConstraint

Deprecated. Class parameter whose restriction class is used to check the validity of the pattern parameter.

restrictionClass - Variable in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ClassListParameter

The restriction class for the list of class names.

restrictionClass - Variable in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ClassParameter

The restriction class for this class parameter.

restrictionString() - Method in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters.ClassParameter

Provides a description string listing all classes for the given superclass or interface as specified in the properties.

result - Variable in class de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.SUBCLU

Holds the result;

result - Variable in class de.lmu.ifi.dbs.elki.KDDTask

Store the result.

Result - Interface in de.lmu.ifi.dbs.elki.result

Interface for all classes that are considered a result.

result - Variable in class de.lmu.ifi.dbs.elki.visualization.gui.overview.OverviewPlot

Result we work on.

result - Variable in class de.lmu.ifi.dbs.elki.visualization.visualizers.vis2d.ClusterOrderVisualizer

The result we visualize

result - Variable in class de.lmu.ifi.dbs.elki.visualization.visualizers.VisualizerContext

The full result object

RESULT_HANDLER - Static variable in class de.lmu.ifi.dbs.elki.utilities.optionhandling.OptionID

OptionID for KDDTask.RESULT_HANDLER_PARAM

RESULT_HANDLER_PARAM - Variable in class de.lmu.ifi.dbs.elki.KDDTask

Parameter to specify the result handler to be used, must extend ResultHandler.

resulthandler - Variable in class de.lmu.ifi.dbs.elki.KDDTask

Output handler.

ResultHandler<O extends DatabaseObject,R extends Result> - Interface in de.lmu.ifi.dbs.elki.result

Interface for any class that can handle results

resultList - Variable in class de.lmu.ifi.dbs.elki.algorithm.clustering.DBSCAN

Holds a list of clusters found.

resultList - Variable in class de.lmu.ifi.dbs.elki.algorithm.clustering.ProjectedDBSCAN

Holds a list of clusters found.

resultList - Variable in class de.lmu.ifi.dbs.elki.algorithm.clustering.SNNClustering

Holds a list of clusters found.

results - Variable in class de.lmu.ifi.dbs.elki.result.MultiResult

Store the actual results

results - Variable in class de.lmu.ifi.dbs.elki.utilities.QueryStatistic

The overall number of the result objects after refinement plus the true hits.

ResultUtil - Class in de.lmu.ifi.dbs.elki.result

Utilities for handling result objects

ResultUtil() - Constructor for class de.lmu.ifi.dbs.elki.result.ResultUtil

ResultVisualizer - Class in de.lmu.ifi.dbs.elki.visualization.gui

Handler to process and visualize a Result.

ResultVisualizer(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.visualization.gui.ResultVisualizer

Constructor, adhering to Parameterizable

ResultWindow - Class in de.lmu.ifi.dbs.elki.visualization.gui

Swing window to manage a particular result visualization.

ResultWindow(String, Database<? extends DatabaseObject>, MultiResult, int) - Constructor for class de.lmu.ifi.dbs.elki.visualization.gui.ResultWindow

Constructor.

ResultWriter<O extends DatabaseObject> - Class in de.lmu.ifi.dbs.elki.result

Result handler that feeds the data into a TextWriter

ResultWriter(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.result.ResultWriter

Constructor, adhering to Parameterizable

retries - Variable in class de.lmu.ifi.dbs.elki.data.synthetic.bymodel.GeneratorSingleCluster

Retry count

retrieveBaseParsingresult(InputStream) - Method in class de.lmu.ifi.dbs.elki.parser.meta.MetaParser

Retrieves the ParsingResult of the base parser.

reusableIDs - Variable in class de.lmu.ifi.dbs.elki.database.AbstractDatabase

Provides a list of reusable ids.

reverseEigenVectors(int) - Method in class de.lmu.ifi.dbs.elki.math.linearalgebra.SortedEigenPairs

Returns the last n sorted eigenvectors as a matrix.

reverseKNNQuery(Integer, int, DistanceFunction<O, D>) - Method in interface de.lmu.ifi.dbs.elki.database.Database

Performs a reverse k-nearest neighbor query for the given object ID.

reverseKNNQuery(Integer, int, DistanceFunction<O, T>) - Method in class de.lmu.ifi.dbs.elki.database.MetricalIndexDatabase

reverseKNNQuery(Integer, int, DistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.database.SequentialDatabase

reverseKNNQuery(Integer, int, DistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.database.SpatialIndexDatabase

Performs a reverse k-nearest neighbor query for the given object ID.

reverseKNNQuery(O, int) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.MetricalIndex

Performs a reverse k-nearest neighbor query for the given object ID.

reverseKNNQuery(O, int) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp.MkAppTree

Performs a reverse k-nearest neighbor query for the given object ID.

reverseKNNQuery(O, int) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop.MkCoPTree

Performs a reverse k-nearest neighbor query for the given object ID.

reverseKNNQuery(O, int) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax.MkMaxTree

Performs a reverse k-nearest neighbor query for the given object ID.

reverseKNNQuery(O, int) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab.MkTabTree

reverseKNNQuery(O, int) - Method in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree.MTree

Throws an UnsupportedOperationException since reverse knn queries are not yet supported by an M-Tree.

reverseKNNQuery(O, int, SpatialDistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.AbstractRStarTree

Performs a reverse k-nearest neighbor query for the given object ID.

reverseKNNQuery(O, int, SpatialDistanceFunction<O, T>) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNTree

Performs a reverse k-nearest neighbor query for the given object ID.

reverseKNNQuery(O, int, SpatialDistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialIndex

Performs a reverse k-nearest neighbor query for the given object ID.

rewind() - Method in class de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization.MergedParameterization

Rewind the configuration to the initial situation

RGBHistogramQuadraticDistanceFunction<V extends NumberVector<V,?>> - Class in de.lmu.ifi.dbs.elki.distance.distancefunction.colorhistogram

Distance function for RGB color histograms based on a quadratic form and color similarity.

RGBHistogramQuadraticDistanceFunction(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.distance.distancefunction.colorhistogram.RGBHistogramQuadraticDistanceFunction

Constructor, adhering to Parameterizable

rhs - Variable in class de.lmu.ifi.dbs.elki.math.linearalgebra.LinearEquationSystem

The right hand side of the equation system.

rightChild - Variable in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.cash.CASHInterval

Holds the right child.

rightChild(int) - Method in class de.lmu.ifi.dbs.elki.utilities.heap.DefaultHeap

Return the index of the right child of of the node at index i, nullIndex if there is no such child.

rightChild(Deap<K, V>) - Method in class de.lmu.ifi.dbs.elki.utilities.heap.PersistentHeap

Returns the right child of the specified deap in this heap.

rightNeighbor(CLIQUEUnit<V>, Integer) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.clique.CLIQUESubspace

Returns the right neighbor of the given unit in the specified dimension.

rkNNStatistics - Variable in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop.MkCoPTree

Provides some statistics about performed reverse knn-queries.

rkNNStatistics - Variable in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax.MkMaxTree

Provides some statistics about performed reverse knn-queries.

rmax - Variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.LOCI

Holds the value of LOCI.RMAX_PARAM.

RMAX_ID - Static variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.LOCI

OptionID for LOCI.RMAX_PARAM

RMAX_PARAM - Variable in class de.lmu.ifi.dbs.elki.algorithm.outlier.LOCI

Parameter to specify the maximum radius of the neighborhood to be considered, must be suitable to the distance function specified.

ROC - Class in de.lmu.ifi.dbs.elki.evaluation.roc

Compute ROC (Receiver Operating Characteristics) curves.

ROC() - Constructor for class de.lmu.ifi.dbs.elki.evaluation.roc.ROC

ROC.DistanceResultAdapter<D extends Distance<D>> - Class in de.lmu.ifi.dbs.elki.evaluation.roc

This adapter can be used for an arbitrary collection of Integers, and uses that id1.compareTo(id2) !

ROC.DistanceResultAdapter(Iterator<DistanceResultPair<D>>) - Constructor for class de.lmu.ifi.dbs.elki.evaluation.roc.ROC.DistanceResultAdapter

Constructor

ROC.SimpleAdapter - Class in de.lmu.ifi.dbs.elki.evaluation.roc

This adapter can be used for an arbitrary collection of Integers, and uses that id1.compareTo(id2) !

ROC.SimpleAdapter(Iterator<Integer>) - Constructor for class de.lmu.ifi.dbs.elki.evaluation.roc.ROC.SimpleAdapter

Constructor

ROC_AUC - Static variable in class de.lmu.ifi.dbs.elki.evaluation.roc.ComputeROCCurve

The association id to associate the ROC Area-under-Curve.

root - Variable in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPlot

Root element of the document.

rootEntry - Variable in class de.lmu.ifi.dbs.elki.index.tree.TreeIndex

The entry representing the root node.

routingObjectID - Variable in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.MTreeDirectoryEntry

The id of routing object of this entry.

routingObjectID - Variable in class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.util.PQNode

The id of the routing object.

row - Variable in class de.lmu.ifi.dbs.elki.math.linearalgebra.LinearEquationSystem

Encodes row permutations, row i is at position row[i].

ROW_ID - Static variable in class de.lmu.ifi.dbs.elki.database.AssociationID

The association id to associate a row id to an object.

rowdimension - Variable in class de.lmu.ifi.dbs.elki.math.linearalgebra.Matrix

Row dimension.

rowIDs - Variable in class de.lmu.ifi.dbs.elki.data.model.Bicluster

The ids of the rows included in the bicluster.

rowIterator() - Method in class de.lmu.ifi.dbs.elki.data.model.Bicluster

Provides an iterator for the row ids.

RStarTree<O extends NumberVector<O,?>> - Class in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar

RStarTree is a spatial index structure based on the concepts of the R*-Tree.

RStarTree(Parameterization) - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar.RStarTree

Constructor, adhering to Parameterizable

RStarTreeAdapter - Class in de.lmu.ifi.dbs.elki.visualization.visualizers.adapter

Adapter that will look for an AbstractRStarTree to visualize

RStarTreeAdapter() - Constructor for class de.lmu.ifi.dbs.elki.visualization.visualizers.adapter.RStarTreeAdapter

Constructor.

RStarTreeNode - Class in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar

Represents a node in an R*-Tree.

RStarTreeNode() - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar.RStarTreeNode

Empty constructor for Externalizable interface.

RStarTreeNode(PageFile<RStarTreeNode>, int, boolean) - Constructor for class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar.RStarTreeNode

Creates a new RStarTreeNode with the specified parameters.

run(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.AbstractAlgorithm

Calls the runInTime()-method of extending classes.

run(Database<O>) - Method in interface de.lmu.ifi.dbs.elki.algorithm.Algorithm

Runs the algorithm.

run(Database<O>) - Method in interface de.lmu.ifi.dbs.elki.algorithm.clustering.ClusteringAlgorithm

Runs the algorithm.

run() - Method in class de.lmu.ifi.dbs.elki.application.AbstractApplication

Runs the application.

run() - Method in class de.lmu.ifi.dbs.elki.application.cache.CacheDoubleDistanceInOnDiskMatrix

run() - Method in class de.lmu.ifi.dbs.elki.application.cache.CacheFloatDistanceInOnDiskMatrix

run() - Method in class de.lmu.ifi.dbs.elki.application.ComputeSingleColorHistogram

run() - Method in class de.lmu.ifi.dbs.elki.application.GeneratorXMLSpec

Runs the wrapper with the specified arguments.

run() - Method in class de.lmu.ifi.dbs.elki.application.KDDCLIApplication

run(Database<O>, DistanceFunction<O, D>) - Method in class de.lmu.ifi.dbs.elki.application.visualization.KNNExplorer.ExplorerWindow

Process the given Database and distance function.

run() - Method in class de.lmu.ifi.dbs.elki.application.visualization.KNNExplorer

run() - Method in class de.lmu.ifi.dbs.elki.KDDTask

Method to run the specified algorithm using the specified database connection.

run() - Method in class de.lmu.ifi.dbs.elki.math.linearalgebra.fitting.LevenbergMarquardtMethod

Iterate until convergence, at most 100 times.

run(Database<V>, boolean, boolean) - Method in class de.lmu.ifi.dbs.elki.preprocessing.DiSHPreprocessor

run(Database<V>, boolean, boolean) - Method in class de.lmu.ifi.dbs.elki.preprocessing.HiSCPreprocessor

run(Database<V>, boolean, boolean) - Method in class de.lmu.ifi.dbs.elki.preprocessing.LocalPCAPreprocessor

Performs for each object of the specified database a filtered PCA based on the local neighborhood of the object.

run(Database<O>, boolean, boolean) - Method in class de.lmu.ifi.dbs.elki.preprocessing.MaterializeKNNPreprocessor

Annotates the nearest neighbors based on the values of MaterializeKNNPreprocessor.k and MaterializeKNNPreprocessor.distanceFunction to each database object.

run(Database<O>, boolean, boolean) - Method in interface de.lmu.ifi.dbs.elki.preprocessing.Preprocessor

This method executes the particular preprocessing step of this Preprocessor for the objects of the specified database.

run(Database<V>, boolean, boolean) - Method in class de.lmu.ifi.dbs.elki.preprocessing.ProjectedDBSCANPreprocessor

run(Database<O>, boolean, boolean) - Method in class de.lmu.ifi.dbs.elki.preprocessing.SharedNearestNeighborsPreprocessor

Annotates the nearest neighbors based on the values of SharedNearestNeighborsPreprocessor.numberOfNeighbors and SharedNearestNeighborsPreprocessor.distanceFunction to each database object.

run(Database<O>, boolean, boolean) - Method in class de.lmu.ifi.dbs.elki.preprocessing.SpatialApproximationMaterializeKNNPreprocessor

Annotates the nearest neighbors based on the values of MaterializeKNNPreprocessor.k and MaterializeKNNPreprocessor.distanceFunction to each database object.

run() - Method in class de.lmu.ifi.dbs.elki.visualization.batikutil.AttributeModifier

run() - Method in class de.lmu.ifi.dbs.elki.visualization.batikutil.JSVGUpdateSynchronizer.JSVGSynchronizedRunner

run() - Method in class de.lmu.ifi.dbs.elki.visualization.batikutil.NodeAppendChild

run() - Method in class de.lmu.ifi.dbs.elki.visualization.batikutil.NodeReplaceChild

run() - Method in class de.lmu.ifi.dbs.elki.visualization.batikutil.NodeReplacer

run() - Method in class de.lmu.ifi.dbs.elki.visualization.gui.overview.OverviewPlot.ThumbnailThread

runButton - Variable in class de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI

The "run" button.

runCLIApplication(Class<?>, String[]) - Static method in class de.lmu.ifi.dbs.elki.application.AbstractApplication

Generic command line invocation.

runDBSCAN(Database<V>, List<Integer>, Subspace<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.SUBCLU

Runs the DBSCAN algorithm on the specified partition of the database in the given subspace.

runDerivator(Database<ParameterizationFunction>, int, CASHInterval, Set<Integer>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.CASH

Runs the derivator on the specified interval and assigns all points having a distance less then the standard deviation of the derivator model to the model to this model.

runDerivator(Database<ParameterizationFunction>, int, Set<Integer>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.CASH

Runs the derivator on the specified interval and assigns all points having a distance less then the standard deviation of the derivator model to the model to this model.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.AbstractAlgorithm

The run method encapsulated in measure of runtime.

runInTime(Database<BitVector>) - Method in class de.lmu.ifi.dbs.elki.algorithm.APRIORI

Performs the APRIORI algorithm on the given database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.ByLabelClustering

Run the actual clustering algorithm.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.ByLabelHierarchicalClustering

Run the actual clustering algorithm.

runInTime(Database<ParameterizationFunction>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.CASH

Performs the CASH algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.COPAC

Performs the COPAC algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.ERiC

Performs the ERiC algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.HiCO

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.ORCLUS

Performs the ORCLUS algorithm on the given database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.DBSCAN

Performs the DBSCAN algorithm on the given database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.DeLiClu

Performs the DeLiClu algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.EM

Performs the EM clustering algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.KMeans

Performs the k-means algorithm on the given database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.OPTICS

Performs the OPTICS algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.ProjectedDBSCAN

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.SLINK

Performs the SLINK algorithm on the given database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.SNNClustering

Performs the SNN clustering algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.CLIQUE

Performs the CLIQUE algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.DiSH

Performs the DiSH algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.HiSC

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.PROCLUS

Performs the PROCLUS algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.SUBCLU

Performs the SUBCLU algorithm on the given database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.TrivialAllInOne

Run the actual clustering algorithm.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.TrivialAllNoise

Run the actual clustering algorithm.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.DependencyDerivator

Computes quantitatively linear dependencies among the attributes of the given database based on a linear correlation PCA.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.DummyAlgorithm

Iterates over all points in the database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.KNNDistanceOrder

Provides an order of the kNN-distances for all objects within the specified database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.KNNJoin

Joins in the given spatial database to each object its k-nearest neighbors.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.MaterializeDistances

Iterates over all points in the database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.MetaMultiAlgorithm

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.NullAlgorithm

Iterates over all points in the database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.ABOD

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.AbstractDBOutlier

Runs the algorithm in the timed evaluation part.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.EMOutlier

Runs the algorithm in the timed evaluation part.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.GaussianModel

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.GaussianUniformMixture

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.INFLO

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.KNNOutlier

Runs the algorithm in the timed evaluation part.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.KNNWeightOutlier

Runs the algorithm in the timed evaluation part.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.LDOF

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.LOCI

Runs the algorithm in the timed evaluation part.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.LOF

Performs the Generalized LOF_SCORE algorithm on the given database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.LoOP

Performs the LoOP algorithm on the given database.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.OPTICSOF

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.ReferenceBasedOutlierDetection

Runs the algorithm in the timed evaluation part.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.outlier.SOD

Performs the SOD algorithm on the given database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.statistics.DistanceStatisticsWithClasses

Iterates over all points in the database.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.statistics.EvaluateRankingQuality

Run the algorithm.

runInTime(Database<V>) - Method in class de.lmu.ifi.dbs.elki.algorithm.statistics.RankingQualityHistogram

Run the algorithm.

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.evaluation.histogram.ComputeOutlierHistogram

runInTime(Database<O>) - Method in class de.lmu.ifi.dbs.elki.evaluation.roc.ComputeROCCurve

runner - Variable in class de.lmu.ifi.dbs.elki.visualization.svg.SVGPlot

Registers changes of this SVGPlot.

runPartitionAlgorithm(Database<V>, Map<Integer, List<Integer>>) - Method in class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.COPAC

Runs the partition algorithm and creates the result.

runPreprocessor(Database<O>) - Method in class de.lmu.ifi.dbs.elki.preprocessing.PreprocessorHandler

Runs the preprocessor on the database if the omit flag is not set or the database does contain the association id neither for any id nor as global association.

runQueue() - Method in class de.lmu.ifi.dbs.elki.visualization.svg.UpdateRunner

Run the processing queue now.

runTask() - Method in class de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI

Do a full run of the KDDTask with the specified parameters.

runVarianceAnalysis(Integer, List<DistanceResultPair<D>>, Database<V>) - Method in class de.lmu.ifi.dbs.elki.preprocessing.FourCPreprocessor

This method implements the type of variance analysis to be computed for a given point.

runVarianceAnalysis(Integer, List<DistanceResultPair<D>>, Database<V>) - Method in class de.lmu.ifi.dbs.elki.preprocessing.PreDeConPreprocessor

TODO provide correct commentary This method implements the type of variance analysis to be computed for a given point.

runVarianceAnalysis(Integer, List<DistanceResultPair<D>>, Database<V>) - Method in class de.lmu.ifi.dbs.elki.preprocessing.ProjectedDBSCANPreprocessor

This method implements the type of variance analysis to be computed for a given point.