Uses of Interface
de.lmu.ifi.dbs.elki.database.ids.DBIDRef

Packages that use DBIDRef

Package	Description
de.lmu.ifi.dbs.elki.algorithm.clustering	Clustering algorithms Clustering algorithms are supposed to implement the Algorithm-Interface.
de.lmu.ifi.dbs.elki.algorithm.clustering.correlation	Correlation clustering algorithms
de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan	Generalized DBSCAN Generalized DBSCAN is an abstraction of the original DBSCAN idea, that allows the use of arbitrary "neighborhood" and "core point" predicates.
de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan.parallel	Parallel versions of Generalized DBSCAN.
de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical	Hierarchical agglomerative clustering (HAC).
de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical.extraction	Extraction of partitional clusterings from hierarchical results.
de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans	K-means clustering and variations
de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.initialization	Initialization strategies for k-means.
de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.parallel	Parallelized implementations of k-means.
de.lmu.ifi.dbs.elki.algorithm.clustering.optics	OPTICS family of clustering algorithms.
de.lmu.ifi.dbs.elki.algorithm.clustering.subspace	Axis-parallel subspace clustering algorithms The clustering algorithms in this package are instances of both, projected clustering algorithms or subspace clustering algorithms according to the classical but somewhat obsolete classification schema of clustering algorithms for axis-parallel subspaces.
de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.clique	Helper classes for the CLIQUE algorithm.
de.lmu.ifi.dbs.elki.algorithm.clustering.trivial	Trivial clustering algorithms: all in one, no clusters, label clusterings These methods are mostly useful for providing a reference result in evaluation.
de.lmu.ifi.dbs.elki.algorithm.clustering.uncertain	Clustering algorithms for uncertain data.
de.lmu.ifi.dbs.elki.algorithm.outlier.anglebased	Angle-based outlier detection algorithms.
de.lmu.ifi.dbs.elki.algorithm.outlier.distance	Distance-based outlier detection algorithms, such as DBOutlier and kNN.
de.lmu.ifi.dbs.elki.algorithm.outlier.distance.parallel	Parallel implementations of distance-based outlier detectors.
de.lmu.ifi.dbs.elki.algorithm.outlier.intrinsic	Outlier detection algorithms based on intrinsic dimensionality.
de.lmu.ifi.dbs.elki.algorithm.outlier.lof	LOF family of outlier detection algorithms
de.lmu.ifi.dbs.elki.algorithm.outlier.lof.parallel	Parallelized variants of LOF.
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood	Spatial outlier neighborhood classes
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood.weighted	Weighted Neighborhood definitions
de.lmu.ifi.dbs.elki.algorithm.outlier.subspace	Subspace outlier detection methods Methods that detect outliers in subspaces (projections) of the data set.
de.lmu.ifi.dbs.elki.algorithm.projection	Data projections (see also preprocessing filters for basic projections).
de.lmu.ifi.dbs.elki.algorithm.timeseries	Algorithms for change point detection in time series.
de.lmu.ifi.dbs.elki.data	Basic classes for different data types, database object types and label types
de.lmu.ifi.dbs.elki.database	ELKI database layer - loading, storing, indexing and accessing data
de.lmu.ifi.dbs.elki.database.datastore	General data store layer API (along the lines of Map<DBID, T> - use everywhere!)
de.lmu.ifi.dbs.elki.database.datastore.memory	Memory data store implementation for ELKI.
de.lmu.ifi.dbs.elki.database.ids	Database object identification and ID group handling API.
de.lmu.ifi.dbs.elki.database.ids.integer	Integer-based DBID implementation -- do not use directly - always use DBIDUtil.
de.lmu.ifi.dbs.elki.database.query.distance	Prepared queries for distances
de.lmu.ifi.dbs.elki.database.query.knn	Prepared queries for k nearest neighbor (kNN) queries
de.lmu.ifi.dbs.elki.database.query.range	Prepared queries for ε-range queries, that return all objects within the radius ε
de.lmu.ifi.dbs.elki.database.query.rknn	Prepared queries for reverse k nearest neighbor (rkNN) queries
de.lmu.ifi.dbs.elki.database.query.similarity	Prepared queries for similarity functions
de.lmu.ifi.dbs.elki.database.relation	Relations, materialized and virtual (views)
de.lmu.ifi.dbs.elki.distance.distancefunction	Distance functions for use within ELKI.
de.lmu.ifi.dbs.elki.distance.distancefunction.adapter	Distance functions deriving distances from, e.g., similarity measures
de.lmu.ifi.dbs.elki.distance.similarityfunction	Similarity functions
de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel	Kernel functions.
de.lmu.ifi.dbs.elki.evaluation.scores.adapter	Adapter classes for ranking and scoring measures.
de.lmu.ifi.dbs.elki.index	Index structure implementations
de.lmu.ifi.dbs.elki.index.distancematrix	Precomputed distance matrix.
de.lmu.ifi.dbs.elki.index.invertedlist	Indexes using inverted lists.
de.lmu.ifi.dbs.elki.index.preprocessed.knn	Indexes providing KNN and rKNN data.
de.lmu.ifi.dbs.elki.index.preprocessed.localpca	Index using a preprocessed local PCA
de.lmu.ifi.dbs.elki.index.preprocessed.preference	Indexes storing preference vectors
de.lmu.ifi.dbs.elki.index.preprocessed.snn	Indexes providing nearest neighbor sets
de.lmu.ifi.dbs.elki.index.projected	Projected indexes for data
de.lmu.ifi.dbs.elki.index.tree.metrical.covertree	Cover-tree variations.
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants	M-Tree and variants
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees	Metrical index structures based on the concepts of the M-Tree supporting processing of reverse k nearest neighbor queries by using the k-nn distances of the entries
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp	MkAppTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop	MkCoPTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax	MkMaxTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab	MkTabTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree	MTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.query	Classes for performing queries (knn, range, ...) on metrical trees
de.lmu.ifi.dbs.elki.index.tree.spatial.kd	K-d-tree and variants
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants	R*-Tree and variants
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu	DeLiCluTree
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.flat	FlatRStarTree
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.query	Queries on the R-Tree family of indexes: kNN and range queries
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn	RdKNNTree
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar	RStarTree
de.lmu.ifi.dbs.elki.math.statistics.intrinsicdimensionality	Methods for estimating the intrinsic dimensionality.
de.lmu.ifi.dbs.elki.parallel.processor	Processor API of ELKI, and some essential shared processors.
de.lmu.ifi.dbs.elki.result	Result types, representation and handling
de.lmu.ifi.dbs.elki.result.textwriter	Text serialization (CSV, Gnuplot, Console, ...)
de.lmu.ifi.dbs.elki.utilities.datastructures.unionfind	Union-find data structures.
de.lmu.ifi.dbs.elki.visualization.style	Style management for ELKI visualizations
de.lmu.ifi.dbs.elki.visualization.visualizers.pairsegments	Visualizers for inspecting cluster differences using pair counting segments
de.lmu.ifi.dbs.elki.visualization.visualizers.parallel	Visualizers based on parallel coordinates
de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.selection	Visualizers for object selection based on parallel projections
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot	Visualizers based on scatterplots
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.outlier	Visualizers for outlier scores based on 2D projections
tutorial.clustering	Classes from the tutorial on implementing a custom k-means variation

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering with parameters of type DBIDRef

Modifier and Type	Method and Description
protected int	GriDBSCAN.Instance.expandCluster(DBIDRef seed, int clusterid, WritableIntegerDataStore clusterids, ModifiableDoubleDBIDList neighbors, ArrayModifiableDBIDs activeSet, RangeQuery<V> rq, FiniteProgress pprog) Set-based expand cluster implementation.
protected void	DBSCAN.expandCluster(Relation<O> relation, RangeQuery<O> rangeQuery, DBIDRef startObjectID, ArrayModifiableDBIDs seeds, FiniteProgress objprog, IndefiniteProgress clusprog) DBSCAN-function expandCluster.
protected void	SNNClustering.expandCluster(SimilarityQuery<O> snnInstance, DBIDRef startObjectID, FiniteProgress objprog, IndefiniteProgress clusprog) DBSCAN-function expandCluster adapted to SNN criterion.
protected ArrayModifiableDBIDs	SNNClustering.findSNNNeighbors(SimilarityQuery<O> snnInstance, DBIDRef queryObject) Returns the shared nearest neighbors of the specified query object in the given database.
private void	GriDBSCAN.Instance.insertIntoGrid(DBIDRef id, V obj, int d, int v) Insert a single object into the grid; potentially into multiple cells (at most 2^d) via recursion.
protected int	GriDBSCAN.Instance.processCorePoint(DBIDRef seed, DoubleDBIDList newneighbors, int clusterid, WritableIntegerDataStore clusterids, ArrayModifiableDBIDs activeSet) Process a single core point.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.correlation

Fields in de.lmu.ifi.dbs.elki.algorithm.clustering.correlation with type parameters of type DBIDRef

Modifier and Type	Field and Description
(package private) java.util.Comparator<DBIDRef>	HiCO.Instance.tmpcomp Sort object by the temporary fields.

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.correlation with parameters of type DBIDRef

Modifier and Type	Method and Description
int	HiCO.Instance.compare(DBIDRef o1, DBIDRef o2)
protected void	HiCO.Instance.expandDBID(DBIDRef id)
protected void	HiCO.Instance.initialDBID(DBIDRef id)

Constructors in de.lmu.ifi.dbs.elki.algorithm.clustering.correlation with parameters of type DBIDRef

Constructor and Description
ORCLUSCluster(double[] o, DBIDRef id) Creates a new cluster containing the specified object o.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan with parameters of type DBIDRef

Modifier and Type	Method and Description
protected abstract M	AbstractRangeQueryNeighborPredicate.computeLocalModel(DBIDRef id, DoubleDBIDList neighbors, Relation<O> relation) Method to compute the actual data model.
protected COPACNeighborPredicate.COPACModel	COPACNeighborPredicate.computeLocalModel(DBIDRef id, DoubleDBIDList knnneighbors, Relation<V> relation) COPAC model computation
protected PreDeConNeighborPredicate.PreDeConModel	PreDeConNeighborPredicate.computeLocalModel(DBIDRef id, DoubleDBIDList neighbors, Relation<V> relation)
protected PreDeConNeighborPredicate.PreDeConModel	FourCNeighborPredicate.computeLocalModel(DBIDRef id, DoubleDBIDList neighbors, Relation<V> relation)
boolean	COPACNeighborPredicate.COPACModel.contains(DBIDRef o)
int	ERiCNeighborPredicate.Instance.dimensionality(DBIDRef id) Get the correlation dimensionality of a single object.
int	COPACNeighborPredicate.Instance.dimensionality(DBIDRef id) Get the correlation dimensionality of a single object.
protected int	GeneralizedDBSCAN.Instance.expandCluster(DBIDRef seed, int clusterid, WritableIntegerDataStore clusterids, T neighbors, ArrayModifiableDBIDs activeSet, FiniteProgress progress) Set-based expand cluster implementation.
DoubleDBIDList	EpsilonNeighborPredicate.Instance.getNeighbors(DBIDRef reference)
DoubleDBIDList	SimilarityNeighborPredicate.Instance.getNeighbors(DBIDRef reference)
DBIDs	ERiCNeighborPredicate.Instance.getNeighbors(DBIDRef reference)
COPACNeighborPredicate.COPACModel	COPACNeighborPredicate.Instance.getNeighbors(DBIDRef reference)
PreDeConNeighborPredicate.PreDeConModel	PreDeConNeighborPredicate.Instance.getNeighbors(DBIDRef reference)
T	NeighborPredicate.Instance.getNeighbors(DBIDRef reference) Get the neighbors of a reference object for DBSCAN.
PreDeConNeighborPredicate.PreDeConModel	FourCNeighborPredicate.Instance.getNeighbors(DBIDRef reference)
boolean	MinPtsCorePredicate.Instance.isCorePoint(DBIDRef point, DBIDs neighbors)
boolean	FourCCorePredicate.Instance.isCorePoint(DBIDRef point, PreDeConNeighborPredicate.PreDeConModel model)
boolean	PreDeConCorePredicate.Instance.isCorePoint(DBIDRef point, PreDeConNeighborPredicate.PreDeConModel model)
boolean	CorePredicate.Instance.isCorePoint(DBIDRef point, T neighbors) Decide whether the point is a core point, based on its neighborhood.
protected int	GeneralizedDBSCAN.Instance.processCorePoint(DBIDRef seed, T newneighbors, int clusterid, WritableIntegerDataStore clusterids, ArrayModifiableDBIDs activeSet) Process a single core point.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan.parallel

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan.parallel with parameters of type DBIDRef

Modifier and Type	Method and Description
void	ParallelGeneralizedDBSCAN.Instance.Mapper.map(DBIDRef id)
protected void	ParallelGeneralizedDBSCAN.Instance.processNeighbors(DBIDRef id, T neighbors) Synchronize function to process the neighbors.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical with parameters of type DBIDRef

Modifier and Type	Method and Description
void	PointerHierarchyRepresentationBuilder.add(DBIDRef cur, double distance, DBIDRef par) Add an element to the pointer representation.
void	PointerHierarchyRepresentationBuilder.add(DBIDRef cur, double distance, DBIDRef par, DBIDRef prototype) Add an element to the pointer representation.
private void	CLINK.clinkstep3(DBIDRef id, DBIDArrayIter i, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) Third step: Determine the values for P and L
private void	CLINK.clinkstep4567(DBIDRef id, ArrayDBIDs ids, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) Fourth to seventh step of CLINK: find best insertion
private void	CLINK.clinkstep8(DBIDRef id, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) Update hierarchy.
int	PointerHierarchyRepresentationResult.Sorter.compare(DBIDRef o1, DBIDRef o2)
private static double	MiniMax.findPrototypeSingleton(DistanceQuery<?> dq, DBIDs cx, DBIDRef cy, DBIDVar prototype) Find the prototypes.
double	PointerHierarchyRepresentationBuilder.getDistance(DBIDRef id) Get the current linking distance of an object.
int	PointerHierarchyRepresentationBuilder.getSize(DBIDRef id) Get the cluster size of the current object.
boolean	PointerHierarchyRepresentationBuilder.isLinked(DBIDRef id) Test if an object is already linked.
protected void	CLINK.process(DBIDRef id, ArrayDBIDs ids, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) CLINK main loop, based on the SLINK main loop.
protected void	SLINK.process(DBIDRef id, ArrayDBIDs ids, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) SLINK main loop.
void	PointerHierarchyRepresentationBuilder.setSize(DBIDRef id, int size) Set the cluster size of an object.
private void	SLINK.slinkstep3(DBIDRef id, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) Third step: Determine the values for P and L
private void	SLINK.slinkstep4(DBIDRef id, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda) Fourth step: Actualize the clusters if necessary
private void	SLINKHDBSCANLinearMemory.step1(DBIDRef id, WritableDBIDDataStore pi, WritableDoubleDataStore lambda) First step: Initialize P(id) = id, L(id) = infinity.
private void	SLINK.step2(DBIDRef id, DBIDArrayIter it, int n, DistanceQuery<? super O> distQuery, WritableDoubleDataStore m) Second step: Determine the pairwise distances from all objects in the pointer representation to the new object with the specified id.
private void	SLINKHDBSCANLinearMemory.step2(DBIDRef id, DBIDs processedIDs, DistanceQuery<? super O> distQuery, DoubleDataStore coredists, WritableDoubleDataStore m) Second step: Determine the pairwise distances from all objects in the pointer representation to the new object with the specified id.
private void	SLINK.step2primitive(DBIDRef id, DBIDArrayIter it, int n, Relation<? extends O> relation, PrimitiveDistanceFunction<? super O> distFunc, WritableDoubleDataStore m) Second step: Determine the pairwise distances from all objects in the pointer representation to the new object with the specified id.
private void	SLINKHDBSCANLinearMemory.step3(DBIDRef id, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, DBIDs processedIDs, WritableDoubleDataStore m) Third step: Determine the values for P and L
private void	SLINKHDBSCANLinearMemory.step4(DBIDRef id, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, DBIDs processedIDs) Fourth step: Actualize the clusters if necessary

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical.extraction

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical.extraction with parameters of type DBIDRef

Modifier and Type	Method and Description
void	SimplifiedHierarchyExtraction.TempCluster.add(DBIDRef id) Add new objects to the cluster.
private void	SimplifiedHierarchyExtraction.Instance.addSingleton(SimplifiedHierarchyExtraction.TempCluster clus, DBIDRef id, double dist, boolean asCluster) Add a singleton object, as point or cluster.
HDBSCANHierarchyExtraction.TempCluster	HDBSCANHierarchyExtraction.TempCluster.grow(double dist, HDBSCANHierarchyExtraction.TempCluster other, DBIDRef id) Join the contents of another cluster.
protected Cluster<DendrogramModel>	SimplifiedHierarchyExtraction.Instance.makeCluster(DBIDRef lead, double depth, DBIDs members) Make the cluster for the given object
protected Cluster<DendrogramModel>	AbstractCutDendrogram.Instance.makeCluster(DBIDRef lead, double depth, DBIDs members) Make the cluster for the given object
private void	ClustersWithNoiseExtraction.Instance.mergeClusters(WritableDataStore<ArrayModifiableDBIDs> clusters, DBIDRef it, DBIDRef succ) Merge two clusters
private int	ClustersWithNoiseExtraction.Instance.mergeClusterSizes(WritableIntegerDataStore clustersizes, DBIDRef it, DBIDRef succ) Merge two clusters, size only.
protected Cluster<DendrogramModel>	SimplifiedHierarchyExtraction.Instance.toCluster(SimplifiedHierarchyExtraction.TempCluster temp, Clustering<DendrogramModel> clustering, DBIDRef lead) Make the cluster for the given object

Constructors in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical.extraction with parameters of type DBIDRef

Constructor and Description
TempCluster(double dist, DBIDRef a) Constructor.
TempCluster(double dist, DBIDRef a, DBIDRef b) Constructor.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans with parameters of type DBIDRef

Modifier and Type	Method and Description
protected double	FastCLARANS.Assignment.computeCostDifferential(DBIDRef h) Compute the reassignment cost, for one swap.
protected double	CLARANS.Assignment.computeCostDifferential(DBIDRef h, int mnum, CLARANS.Assignment scratch) Compute the reassignment cost, for one swap.
protected void	KMedoidsFastPAM1.Instance.computeReassignmentCost(DBIDRef h, double[] cost) Compute the reassignment cost, for all medoids in one pass.
protected double	KMedoidsFastPAM.Instance.computeReassignmentCost(DBIDRef h, int mnum) Compute the reassignment cost of one swap.
protected double	KMedoidsPAM.Instance.computeReassignmentCost(DBIDRef h, int mnum) Compute the reassignment cost of one swap.
protected double	KMedoidsPAMReynolds.Instance.computeReassignmentCost(DBIDRef h, WritableDoubleDataStore tnearest) Compute the reassignment cost, for all medoids in one pass.
protected int	KMedoidsPark.currentCluster(java.util.List<? extends ModifiableDBIDs> clusters, DBIDRef id) Find the current cluster assignment.
double	CLARA.CachedDistanceQuery.distance(DBIDRef id1, DBIDRef id2)
double	CLARA.CachedDistanceQuery.distance(DBIDRef id1, V o2)
double	CLARA.CachedDistanceQuery.distance(V o1, DBIDRef id2)
protected void	FastCLARANS.Assignment.performLastSwap(DBIDRef h) Compute the reassignment cost, for one swap.
protected double	CLARANS.Assignment.recompute(DBIDRef id, int mnum, double known, int snum, double sknown) Recompute the assignment of one point.
protected void	KMedoidsFastPAM1.Instance.updateAssignment(ArrayModifiableDBIDs medoids, DBIDArrayIter miter, DBIDRef h, int m) Update an existing cluster assignment.
private int	KMedoidsFastPAM1.Instance.updateSecondNearest(DBIDRef j, DBIDArrayIter medoids, int h, double dist_h, int n) Find the second nearest medoid.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.initialization

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.initialization with parameters of type DBIDRef

Modifier and Type	Method and Description
(package private) static double	KMeansPlusPlusInitialMeans.initialWeights(WritableDoubleDataStore weights, DBIDs ids, DBIDRef latest, DistanceQuery<?> distQ) Initialize the weight list.
private static double	KMeansPlusPlusInitialMeans.updateWeights(WritableDoubleDataStore weights, DBIDs ids, DBIDRef latest, DistanceQuery<?> distQ) Update the weight list.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.parallel

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.parallel with parameters of type DBIDRef

Modifier and Type	Method and Description
void	KMeansProcessor.Instance.map(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.optics

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.optics with parameters of type DBIDRef

Modifier and Type	Method and Description
void	ClusterOrder.add(DBIDRef id, double reach, DBIDRef pre) Add an object to the cluster order.
int	GeneralizedOPTICS.Instance.compare(DBIDRef o1, DBIDRef o2)
protected void	OPTICSList.Instance.expandClusterOrder(DBIDRef objectID) OPTICS-function expandClusterOrder.
protected void	OPTICSHeap.Instance.expandClusterOrder(DBIDRef objectID) OPTICS-function expandClusterOrder.
protected abstract void	GeneralizedOPTICS.Instance.expandDBID(DBIDRef id) Add the current DBID to the cluster order, and expand its neighbors if minPts and similar conditions are satisfied.
int	CorrelationClusterOrder.getCorrelationValue(DBIDRef id) Get the correlation dimensionality.
double	CorrelationClusterOrder.getEuclideanValue(DBIDRef id) Get the Euclidean distance in the orthogonal space.
void	ClusterOrder.getPredecessor(DBIDRef id, DBIDVar out) Get the predecessor.
double	ClusterOrder.getReachability(DBIDRef id) Get the reachability of an object.
protected abstract void	GeneralizedOPTICS.Instance.initialDBID(DBIDRef id) Initialize for a new DBID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.subspace

Fields in de.lmu.ifi.dbs.elki.algorithm.clustering.subspace with type parameters of type DBIDRef

Modifier and Type	Field and Description
(package private) java.util.Comparator<DBIDRef>	DiSH.Instance.tmpcomp Sort object by the temporary fields.

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.subspace with parameters of type DBIDRef

Modifier and Type	Method and Description
int	DiSH.Instance.compare(DBIDRef o1, DBIDRef o2)
int	DiSH.Instance.Sorter.compare(DBIDRef o1, DBIDRef o2)
int	HiSC.Instance.compare(DBIDRef o1, DBIDRef o2)
protected void	DiSH.Instance.expandDBID(DBIDRef id)
protected void	HiSC.Instance.expandDBID(DBIDRef id)
protected DBIDs	DOC.findNeighbors(DBIDRef q, long[] nD, ArrayModifiableDBIDs S, Relation<V> relation) Find the neighbors of point q in the given subspace
long[]	DiSH.DiSHClusterOrder.getCommonPreferenceVector(DBIDRef id) Get the common subspace.
protected void	DiSH.Instance.initialDBID(DBIDRef id)
protected void	HiSC.Instance.initialDBID(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.clique

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.clique with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	CLIQUEUnit.addFeatureVector(DBIDRef id, NumberVector vector) Adds the id of the specified feature vector to this unit, if this unit contains the feature vector.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.trivial

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.trivial with parameters of type DBIDRef

Modifier and Type	Method and Description
private void	ByLabelHierarchicalClustering.assign(java.util.HashMap<java.lang.String,DBIDs> labelMap, java.lang.String label, DBIDRef id) Assigns the specified id to the labelMap according to its label
private void	ByLabelClustering.assign(java.util.HashMap<java.lang.String,DBIDs> labelMap, java.lang.String label, DBIDRef id) Assigns the specified id to the labelMap according to its label

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.clustering.uncertain

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.uncertain with parameters of type DBIDRef

Modifier and Type	Method and Description
DBIDs	FDBSCANNeighborPredicate.Instance.getNeighbors(DBIDRef reference)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.anglebased

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.anglebased with parameters of type DBIDRef

Modifier and Type	Method and Description
protected double	ABOD.computeABOF(KernelMatrix kernelMatrix, DBIDRef pA, DBIDArrayIter pB, DBIDArrayIter pC, MeanVariance s) Compute the exact ABOF value.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.distance

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.distance with parameters of type DBIDRef

Modifier and Type	Method and Description
protected static double	SOS.computeH(DBIDRef ignore, DoubleDBIDListIter it, double[] p, double mbeta) Compute H (observed perplexity) for row i, and the row pij_i.
static double	SOS.computePi(DBIDRef ignore, DoubleDBIDListIter it, double[] p, double perplexity, double logPerp) Compute row p[i], using binary search on the kernel bandwidth sigma to obtain the desired perplexity.
protected static double	SOS.estimateInitialBeta(DBIDRef ignore, DoubleDBIDListIter it, double perplexity) Estimate beta from the distances in a row.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.distance.parallel

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.distance.parallel with parameters of type DBIDRef

Modifier and Type	Method and Description
void	KNNWeightProcessor.Instance.map(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.intrinsic

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.intrinsic with parameters of type DBIDRef

Modifier and Type	Method and Description
protected static void	ISOS.adjustDistances(DBIDRef ignore, DoubleDBIDListIter ki, double max, double id, ModifiableDoubleDBIDList dists)
protected double	ISOS.estimateID(DBIDRef ignore, DoubleDBIDListIter it, double[] p) Estimate the local intrinsic dimensionality.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.lof

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.lof with parameters of type DBIDRef

Modifier and Type	Method and Description
protected double	LOF.computeLOFScore(KNNQuery<O> knnq, DBIDRef cur, DoubleDataStore lrds) Compute a single LOF score.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.lof.parallel

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.lof.parallel with parameters of type DBIDRef

Modifier and Type	Method and Description
void	SimplifiedLRDProcessor.Instance.map(DBIDRef id)
void	LRDProcessor.Instance.map(DBIDRef id)
void	LOFProcessor.Instance.map(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood with parameters of type DBIDRef

Modifier and Type	Method and Description
DBIDs	AbstractPrecomputedNeighborhood.getNeighborDBIDs(DBIDRef reference)
DBIDs	NeighborSetPredicate.getNeighborDBIDs(DBIDRef reference) Get the neighbors of a reference object for DBSCAN.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood.weighted

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood.weighted with parameters of type DBIDRef

Modifier and Type	Method and Description
java.util.Collection<DoubleDBIDPair>	LinearWeightedExtendedNeighborhood.getWeightedNeighbors(DBIDRef reference)
java.util.Collection<DoubleDBIDPair>	UnweightedNeighborhoodAdapter.getWeightedNeighbors(DBIDRef reference)
java.util.Collection<DoubleDBIDPair>	WeightedNeighborSetPredicate.getWeightedNeighbors(DBIDRef reference) Get the neighbors of a reference object for DBSCAN.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.outlier.subspace

Methods in de.lmu.ifi.dbs.elki.algorithm.outlier.subspace with parameters of type DBIDRef

Modifier and Type	Method and Description
private DBIDs	SOD.getNearestNeighbors(Relation<V> relation, SimilarityQuery<V> simQ, DBIDRef queryObject) Get the k nearest neighbors in terms of the shared nearest neighbor distance.
private DoubleDBIDList	OUTRES.initialRange(DBIDRef obj, DBIDs cands, PrimitiveDistanceFunction<? super NumberVector> df, double eps, OUTRES.KernelDensityEstimator kernel, ModifiableDoubleDBIDList n) Initial range query.
double	OUTRES.outresScore(int s, long[] subspace, DBIDRef id, OUTRES.KernelDensityEstimator kernel, DBIDs cands) Main loop of OUTRES.
private DoubleDBIDList	OUTRES.subsetNeighborhoodQuery(DoubleDBIDList neighc, DBIDRef dbid, PrimitiveDistanceFunction<? super NumberVector> df, double adjustedEps, OUTRES.KernelDensityEstimator kernel, ModifiableDoubleDBIDList n) Refine neighbors within a subset.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.projection

Methods in de.lmu.ifi.dbs.elki.algorithm.projection with parameters of type DBIDRef

Modifier and Type	Method and Description
protected void	NearestNeighborAffinityMatrixBuilder.convertNeighbors(DBIDRange ids, DBIDRef ix, boolean square, KNNList neighbours, DoubleArray dist, IntegerArray ind) Load a neighbor query result into a double and and integer array, also removing the query point.
protected void	IntrinsicNearestNeighborAffinityMatrixBuilder.convertNeighbors(DBIDRange ids, DBIDRef ix, boolean square, KNNList neighbours, DoubleArray dist, IntegerArray ind, Mean m) Load a neighbor query result into a double and and integer array, also removing the query point.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.algorithm.timeseries

Methods in de.lmu.ifi.dbs.elki.algorithm.timeseries with parameters of type DBIDRef

Modifier and Type	Method and Description
void	ChangePoints.add(DBIDRef iter, int column, double score) Add a change point to the result.
private double	SigniTrendChangeDetection.Instance.processRow(DBIDRef iter, NumberVector row, ChangePoints changepoints) Process one row, assuming a constant time interval.

Constructors in de.lmu.ifi.dbs.elki.algorithm.timeseries with parameters of type DBIDRef

Constructor and Description
ChangePoint(DBIDRef iter, int column, double score) Constructor.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.data

Methods in de.lmu.ifi.dbs.elki.data with parameters of type DBIDRef

Modifier and Type	Method and Description
int	VectorUtil.SortDBIDsBySingleDimension.compare(DBIDRef id1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database

Methods in de.lmu.ifi.dbs.elki.database with parameters of type DBIDRef

Modifier and Type	Method and Description
SingleObjectBundle	UpdatableDatabase.delete(DBIDRef id) Removes and returns the specified objects with the given ids from the database.
SingleObjectBundle	HashmapDatabase.delete(DBIDRef id) Removes the object from the database (by calling HashmapDatabase.doDelete(DBIDRef) ) and indexes and fires a deletion event.
private void	HashmapDatabase.doDelete(DBIDRef id) Removes the object with the specified id from this database.
private void	DatabaseEventManager.fireObjectChanged(DBIDRef object, DatabaseEventManager.Type type) Handles a DataStoreEvent with the specified type.
void	DatabaseEventManager.fireObjectInserted(DBIDRef insertion) Event when a new object was inserted.
protected void	DatabaseEventManager.fireObjectRemoved(DBIDRef deletion) Event when an objects was removed / deleted.
void	DatabaseEventManager.fireObjectsUpdated(DBIDRef update) Event when an object was changed / updated.
SingleObjectBundle	Database.getBundle(DBIDRef id) Returns the DatabaseObject represented by the specified id.
SingleObjectBundle	AbstractDatabase.getBundle(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.datastore

Methods in de.lmu.ifi.dbs.elki.database.datastore with parameters of type DBIDRef

Modifier and Type	Method and Description
DBIDVar	DBIDDataStore.assignVar(DBIDRef id, DBIDVar var) Retrieves an object from the storage.
int	DataStoreUtil.AscendingByDoubleDataStore.compare(DBIDRef id1, DBIDRef id2)
int	DataStoreUtil.DescendingByDoubleDataStore.compare(DBIDRef id1, DBIDRef id2)
int	DataStoreUtil.AscendingByDoubleDataStoreAndId.compare(DBIDRef id1, DBIDRef id2)
int	DataStoreUtil.DescendingByDoubleDataStoreAndId.compare(DBIDRef id1, DBIDRef id2)
int	DataStoreUtil.AscendingByIntegerDataStore.compare(DBIDRef id1, DBIDRef id2)
int	DataStoreUtil.DescendingByIntegerDataStore.compare(DBIDRef id1, DBIDRef id2)
void	WritableDataStore.delete(DBIDRef id) Delete the contents for a particular ID and notifies the registered listeners.
double	DoubleDataStore.doubleValue(DBIDRef id) Retrieves an object from the storage.
DBID	DBIDDataStore.get(DBIDRef id) Deprecated. Use DBIDDataStore.assignVar(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, de.lmu.ifi.dbs.elki.database.ids.DBIDVar) and a DBIDVar instead, to avoid boxing/unboxing cost.
T	DataStore.get(DBIDRef id) Retrieves an object from the storage.
java.lang.Double	DoubleDataStore.get(DBIDRef id) Deprecated. Use DoubleDataStore.doubleValue(de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
java.lang.Integer	IntegerDataStore.get(DBIDRef id) Deprecated. Use IntegerDataStore.intValue(de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
void	WritableDoubleDataStore.increment(DBIDRef id, double value) Increment the specified value with the specified id in this storage.
void	WritableIntegerDataStore.increment(DBIDRef id, int adjust) Increment a value.
int	IntegerDataStore.intValue(DBIDRef id) Retrieves a value from the storage.
int	DataStoreIDMap.mapDBIDToOffset(DBIDRef dbid) Map a DBID to an array offset.
DBID	WritableDBIDDataStore.put(DBIDRef id, DBID value) Deprecated. Use WritableDBIDDataStore.putDBID(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead, to avoid boxing/unboxing cost.
void	WritableDBIDDataStore.put(DBIDRef id, DBIDRef value) Associates the specified value with the specified id in this storage.
double	WritableDoubleDataStore.put(DBIDRef id, double value) Associates the specified value with the specified id in this storage.
java.lang.Double	WritableDoubleDataStore.put(DBIDRef id, java.lang.Double value) Deprecated. Use WritableDoubleDataStore.putDouble(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, double) instead, to avoid boxing/unboxing cost.
int	WritableIntegerDataStore.put(DBIDRef id, int value) Associates the specified value with the specified id in this storage.
java.lang.Integer	WritableIntegerDataStore.put(DBIDRef id, java.lang.Integer value) Deprecated. Use WritableIntegerDataStore.putInt(de.lmu.ifi.dbs.elki.database.ids.DBIDRef, int) instead, to avoid boxing/unboxing cost.
T	WritableDataStore.put(DBIDRef id, T value) Associates the specified value with the specified id in this storage.
void	WritableDBIDDataStore.putDBID(DBIDRef id, DBIDRef value) Associates the specified value with the specified id in this storage.
double	WritableDoubleDataStore.putDouble(DBIDRef id, double value) Associates the specified value with the specified id in this storage.
int	WritableIntegerDataStore.putInt(DBIDRef id, int value) Associates the specified value with the specified id in this storage.
boolean	WritableRecordStore.remove(DBIDRef id) Remove an object from the store, all columns.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.datastore.memory

Methods in de.lmu.ifi.dbs.elki.database.datastore.memory with parameters of type DBIDRef

Modifier and Type	Method and Description
DBIDVar	MapIntegerDBIDDBIDStore.assignVar(DBIDRef id, DBIDVar var)
DBIDVar	ArrayDBIDStore.assignVar(DBIDRef id, DBIDVar var)
void	ArrayDoubleStore.delete(DBIDRef id)
void	MapIntegerDBIDIntegerStore.delete(DBIDRef id)
void	MapRecordStore.StorageAccessor.delete(DBIDRef id)
void	ArrayStore.delete(DBIDRef id)
void	MapStore.delete(DBIDRef id)
void	MapIntegerDBIDDBIDStore.delete(DBIDRef id)
void	ArrayRecordStore.StorageAccessor.delete(DBIDRef id)
void	ArrayIntegerStore.delete(DBIDRef id)
void	MapIntegerDBIDDoubleStore.delete(DBIDRef id)
void	MapIntegerDBIDStore.delete(DBIDRef id)
void	MapIntegerDBIDRecordStore.StorageAccessor.delete(DBIDRef id)
void	ArrayDBIDStore.delete(DBIDRef id)
double	ArrayDoubleStore.doubleValue(DBIDRef id)
double	MapIntegerDBIDDoubleStore.doubleValue(DBIDRef id)
java.lang.Double	ArrayDoubleStore.get(DBIDRef id) Deprecated.
java.lang.Integer	MapIntegerDBIDIntegerStore.get(DBIDRef id) Deprecated.
T	MapRecordStore.StorageAccessor.get(DBIDRef id)
T	ArrayStore.get(DBIDRef id)
T	MapStore.get(DBIDRef id)
DBID	MapIntegerDBIDDBIDStore.get(DBIDRef id) Deprecated.
T	ArrayRecordStore.StorageAccessor.get(DBIDRef id)
java.lang.Integer	ArrayIntegerStore.get(DBIDRef id) Deprecated.
java.lang.Double	MapIntegerDBIDDoubleStore.get(DBIDRef id) Deprecated.
T	MapIntegerDBIDStore.get(DBIDRef id)
T	MapIntegerDBIDRecordStore.StorageAccessor.get(DBIDRef id)
DBID	ArrayDBIDStore.get(DBIDRef id) Deprecated.
protected <T> T	MapRecordStore.get(DBIDRef id, int index) Actual getter.
protected <T> T	ArrayRecordStore.get(DBIDRef id, int index) Actual getter
protected <T> T	MapIntegerDBIDRecordStore.get(DBIDRef id, int index) Actual getter.
void	ArrayDoubleStore.increment(DBIDRef id, double value)
void	MapIntegerDBIDDoubleStore.increment(DBIDRef id, double value)
void	MapIntegerDBIDIntegerStore.increment(DBIDRef id, int adjust)
void	ArrayIntegerStore.increment(DBIDRef id, int adjust)
int	MapIntegerDBIDIntegerStore.intValue(DBIDRef id)
int	ArrayIntegerStore.intValue(DBIDRef id)
DBID	MapIntegerDBIDDBIDStore.put(DBIDRef id, DBID value) Deprecated.
DBID	ArrayDBIDStore.put(DBIDRef id, DBID value) Deprecated.
void	MapIntegerDBIDDBIDStore.put(DBIDRef id, DBIDRef value)
void	ArrayDBIDStore.put(DBIDRef id, DBIDRef value)
double	ArrayDoubleStore.put(DBIDRef id, double value)
double	MapIntegerDBIDDoubleStore.put(DBIDRef id, double value)
java.lang.Double	ArrayDoubleStore.put(DBIDRef id, java.lang.Double value) Deprecated.
java.lang.Double	MapIntegerDBIDDoubleStore.put(DBIDRef id, java.lang.Double value) Deprecated.
int	MapIntegerDBIDIntegerStore.put(DBIDRef id, int value)
int	ArrayIntegerStore.put(DBIDRef id, int value)
java.lang.Integer	MapIntegerDBIDIntegerStore.put(DBIDRef id, java.lang.Integer value) Deprecated.
java.lang.Integer	ArrayIntegerStore.put(DBIDRef id, java.lang.Integer value) Deprecated.
T	MapRecordStore.StorageAccessor.put(DBIDRef id, T value)
T	ArrayStore.put(DBIDRef id, T value)
T	MapStore.put(DBIDRef id, T value)
T	ArrayRecordStore.StorageAccessor.put(DBIDRef id, T value)
T	MapIntegerDBIDStore.put(DBIDRef id, T value)
T	MapIntegerDBIDRecordStore.StorageAccessor.put(DBIDRef id, T value)
void	MapIntegerDBIDDBIDStore.putDBID(DBIDRef id, DBIDRef value)
void	ArrayDBIDStore.putDBID(DBIDRef id, DBIDRef value)
double	ArrayDoubleStore.putDouble(DBIDRef id, double value)
double	MapIntegerDBIDDoubleStore.putDouble(DBIDRef id, double value)
int	MapIntegerDBIDIntegerStore.putInt(DBIDRef id, int value)
int	ArrayIntegerStore.putInt(DBIDRef id, int value)
boolean	MapRecordStore.remove(DBIDRef id)
boolean	ArrayRecordStore.remove(DBIDRef id)
boolean	MapIntegerDBIDRecordStore.remove(DBIDRef id)
protected <T> T	MapRecordStore.set(DBIDRef id, int index, T value) Actual setter.
protected <T> T	ArrayRecordStore.set(DBIDRef id, int index, T value) Actual setter
protected <T> T	MapIntegerDBIDRecordStore.set(DBIDRef id, int index, T value) Actual setter.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.ids

Subinterfaces of DBIDRef in de.lmu.ifi.dbs.elki.database.ids

Modifier and Type	Interface and Description
interface	DBID Database ID object.
interface	DBIDArrayIter Array iterators that can also go backwards and seek.
interface	DBIDArrayMIter Modifiable array iterator.
interface	DBIDIter Iterator for DBIDs.
interface	DBIDMIter Modifiable DBID iterator.
interface	DBIDVar (Persistent) variable storing a DBID reference.
interface	DoubleDBIDListIter Iterator over double-DBID pairs results.
interface	DoubleDBIDListMIter Modifiable DBIDList iterator.
interface	DoubleDBIDPair Pair of a double value and a DBID.

Classes in de.lmu.ifi.dbs.elki.database.ids that implement DBIDRef

Modifier and Type	Class and Description
protected static class	EmptyDBIDs.EmptyDBIDIterator Iterator for empty DBIDs-

Methods in de.lmu.ifi.dbs.elki.database.ids that return DBIDRef

Modifier and Type	Method and Description
DBIDRef	DBIDFactory.invalid() Get the invalid DBID value, usable as "undefined" placeholder.
static DBIDRef	DBIDUtil.invalid() Get the invalid special ID.

Methods in de.lmu.ifi.dbs.elki.database.ids with parameters of type DBIDRef

Modifier and Type	Method and Description
void	DoubleDBIDList.Consumer.accept(DBIDRef idref, double val) Act on each value.
boolean	ModifiableDBIDs.add(DBIDRef id) Add a single DBID to the collection.
void	ModifiableDoubleDBIDList.add(double distance, DBIDRef id) Add an object to this result.
static int	DBIDUtil.asInteger(DBIDRef id) Export a DBID as int.
int	ArrayDBIDs.binarySearch(DBIDRef key) Search for the position of the given key, assuming that the data set is sorted.
int	EmptyDBIDs.binarySearch(DBIDRef key)
int	DBIDFactory.compare(DBIDRef a, DBIDRef b) Compare two DBIDs, for sorting.
static int	DBIDUtil.compare(DBIDRef id1, DBIDRef id2) Compare two DBIDs.
int	DBID.compareTo(DBIDRef other) Compare two DBIDs for ordering.
boolean	DBIDs.contains(DBIDRef o) Test whether an ID is contained.
boolean	EmptyDBIDs.contains(DBIDRef o)
boolean	KNNHeap.contains(DBIDRef other) Check if an object is already in the heap.
void	DBIDFactory.deallocateSingleDBID(DBIDRef id) Return a single DBID for reuse.
static DBID	DBIDUtil.deref(DBIDRef ref) Dereference a DBID reference.
boolean	DBIDFactory.equal(DBIDRef a, DBIDRef b) Compare two DBIDs, for equality testing.
static boolean	DBIDUtil.equal(DBIDRef id1, DBIDRef id2) Test two DBIDs for equality.
DBIDVar	DBIDVar.from(DBIDDataStore store, DBIDRef ref) Update variable from a data store.
int	DBIDRange.getOffset(DBIDRef dbid) Get offset in the array for a particular DBID.
double	KNNHeap.insert(double distance, DBIDRef id) Add a distance-id pair to the heap unless the distance is too large.
void	ArrayModifiableDBIDs.insert(int i, DBIDRef newval) Insert at position i (starting at 0, moving the remainder by one position).
DBIDPair	DBIDFactory.newPair(DBIDRef id1, DBIDRef id2) Make a DBID pair from two existing DBIDs.
static DBIDPair	DBIDUtil.newPair(DBIDRef id1, DBIDRef id2) Make a DBID pair.
DoubleDBIDPair	DBIDFactory.newPair(double val, DBIDRef id) Make a double-DBID pair.
static DoubleDBIDPair	DBIDUtil.newPair(double val, DBIDRef id) Make a DoubleDBIDPair.
DBIDVar	DBIDFactory.newVar(DBIDRef val) Make a new DBID variable.
static DBIDVar	DBIDUtil.newVar(DBIDRef val) Make a new DBID variable.
static ModifiableDBIDs	DBIDUtil.randomSampleExcept(DBIDs source, DBIDRef except, int k, java.util.Random random) Produce a random sample of the given DBIDs.
static ModifiableDBIDs	DBIDUtil.randomSampleExcept(DBIDs source, DBIDRef except, int k, RandomFactory rnd) Produce a random sample of the given DBIDs.
boolean	ModifiableDBIDs.remove(DBIDRef id) Remove a single DBID from the collection.
DBIDVar	DBIDVar.set(DBIDRef ref) Assign a new value for the reference.
void	ArrayModifiableDBIDs.set(int i, DBIDRef newval) Replace the i'th entry (starting at 0)
void	DBIDArrayMIter.setDBID(DBIDRef val) Set the current value.
void	EmptyDBIDs.EmptyDBIDIterator.setDBID(DBIDRef val)
void	DoubleDBIDListMIter.setDBID(DBIDRef ref) Update the current DBID value.
java.lang.String	DBIDFactory.toString(DBIDRef id) Print a DBID as string.
static java.lang.String	DBIDUtil.toString(DBIDRef id) Format a DBID as string.

Method parameters in de.lmu.ifi.dbs.elki.database.ids with type arguments of type DBIDRef

Modifier and Type	Method and Description
default void	DBIDs.forEach(java.util.function.Consumer<? super DBIDRef> action) Execute a function for each ID.
void	EmptyDBIDs.forEach(java.util.function.Consumer<? super DBIDRef> action)
private static void	QuickSelectDBIDs.insertionSort(ArrayModifiableDBIDs data, java.util.Comparator<? super DBIDRef> comparator, int start, int end, DBIDArrayIter iter1, DBIDArrayIter iter2) Sort a small array using repetitive insertion sort.
static int	QuickSelectDBIDs.median(ArrayModifiableDBIDs data, java.util.Comparator<? super DBIDRef> comparator) Compute the median of an array efficiently using the QuickSelect method.
static int	QuickSelectDBIDs.median(ArrayModifiableDBIDs data, java.util.Comparator<? super DBIDRef> comparator, int begin, int end) Compute the median of an array efficiently using the QuickSelect method.
static int	QuickSelectDBIDs.quantile(ArrayModifiableDBIDs data, java.util.Comparator<? super DBIDRef> comparator, double quant) Compute the median of an array efficiently using the QuickSelect method.
static int	QuickSelectDBIDs.quantile(ArrayModifiableDBIDs data, java.util.Comparator<? super DBIDRef> comparator, int begin, int end, double quant) Compute the median of an array efficiently using the QuickSelect method.
static void	QuickSelectDBIDs.quickSelect(ArrayModifiableDBIDs data, java.util.Comparator<? super DBIDRef> comparator, int rank) QuickSelect is essentially quicksort, except that we only "sort" that half of the array that we are interested in.
static void	QuickSelectDBIDs.quickSelect(ArrayModifiableDBIDs data, java.util.Comparator<? super DBIDRef> comparator, int start, int end, int rank) QuickSelect is essentially quicksort, except that we only "sort" that half of the array that we are interested in.
void	ArrayModifiableDBIDs.sort(java.util.Comparator<? super DBIDRef> comparator) Sort the DBID set.
void	ArrayModifiableDBIDs.sort(int start, int end, java.util.Comparator<? super DBIDRef> comparator) Sort the DBID set.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.ids.integer

Subinterfaces of DBIDRef in de.lmu.ifi.dbs.elki.database.ids.integer

Modifier and Type	Interface and Description
interface	DoubleIntegerDBIDListIter Combination interface of the DoubleDBIDListIter with IntegerDBIDIter.
(package private) interface	DoubleIntegerDBIDListMIter Combination interface for modifiable iterators.
(package private) interface	IntegerDBIDArrayIter Modifiable integer array iterator.
(package private) interface	IntegerDBIDArrayMIter Modifiable integer array iterator.
(package private) interface	IntegerDBIDIter Iterator for integer DBIDs.
(package private) interface	IntegerDBIDMIter Modifiable iterator interface for integer DBIDs.
(package private) interface	IntegerDBIDRef DBID reference that references an integer value.

Classes in de.lmu.ifi.dbs.elki.database.ids.integer that implement DBIDRef

Modifier and Type	Class and Description
private class	ArrayModifiableIntegerDBIDs.Itr Iterator class.
private class	ArrayModifiableIntegerDBIDs.Slice.SliceItr Iterator class.
protected class	ArrayStaticIntegerDBIDs.Itr DBID iterator in ELKI/C style.
private class	ArrayStaticIntegerDBIDs.Slice.SliceItr Iterator class.
private class	DoubleIntegerDBIDArrayList.Itr List iterator.
private class	DoubleIntegerDBIDKNNHeap.UnorderedIter Iterate over all objects in the heap, not ordered.
(package private) class	DoubleIntegerDBIDPair Pair containing a double value and an integer DBID.
private class	DoubleIntegerDBIDSubList.Itr Iterator for the sublist.
protected static class	FastutilIntOpenHashSetModifiableDBIDs.Itr Iterator over Fastutil hashs.
(package private) class	IntegerDBID Database ID object.
protected class	IntegerDBID.Itr Pseudo iterator for DBIDs interface.
private class	IntegerDBIDKNNSubList.Itr Iterator for the sublist.
private static class	IntegerDBIDPair.Itr Iterator.
private class	IntegerDBIDPair.Slice.SliceItr Iterator class.
private static class	IntegerDBIDRange.Itr Iterator in ELKI/C++ style.
(package private) class	IntegerDBIDVar Variable for storing a single DBID reference.
protected class	IntegerDBIDVar.Itr Pseudo iterator for DBIDs interface.
private class	UnmodifiableIntegerArrayDBIDs.Itr Make an existing DBIDMIter unmodifiable.
(package private) class	UnmodifiableIntegerDBIDs.UnmodifiableDBIDIter Make an existing DBIDMIter unmodifiable.

Methods in de.lmu.ifi.dbs.elki.database.ids.integer that return DBIDRef

Modifier and Type	Method and Description
DBIDRef	AbstractIntegerDBIDFactory.invalid()

Methods in de.lmu.ifi.dbs.elki.database.ids.integer with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	FastutilIntOpenHashSetModifiableDBIDs.add(DBIDRef e)
boolean	ArrayModifiableIntegerDBIDs.add(DBIDRef e)
void	DoubleIntegerDBIDArrayList.add(double dist, DBIDRef id)
int	IntegerDBIDPair.binarySearch(DBIDRef key)
int	IntegerDBIDPair.Slice.binarySearch(DBIDRef key)
int	IntegerDBIDRange.binarySearch(DBIDRef key)
int	IntegerDBIDVar.binarySearch(DBIDRef key)
int	UnmodifiableIntegerArrayDBIDs.binarySearch(DBIDRef key)
int	IntegerDBID.binarySearch(DBIDRef key)
int	ArrayStaticIntegerDBIDs.binarySearch(DBIDRef key)
int	ArrayStaticIntegerDBIDs.Slice.binarySearch(DBIDRef key)
int	ArrayModifiableIntegerDBIDs.binarySearch(DBIDRef key)
int	ArrayModifiableIntegerDBIDs.Slice.binarySearch(DBIDRef key)
int	AbstractIntegerDBIDFactory.compare(DBIDRef a, DBIDRef b)
int	IntegerDBID.compareTo(DBIDRef o)
boolean	FastutilIntOpenHashSetModifiableDBIDs.contains(DBIDRef o)
boolean	IntegerDBIDPair.contains(DBIDRef o)
boolean	IntegerDBIDPair.Slice.contains(DBIDRef o)
boolean	DoubleIntegerDBIDArrayList.contains(DBIDRef o)
boolean	IntegerDBIDRange.contains(DBIDRef o)
boolean	IntegerDBIDVar.contains(DBIDRef o)
boolean	UnmodifiableIntegerArrayDBIDs.contains(DBIDRef o)
boolean	IntegerDBID.contains(DBIDRef o)
boolean	IntegerDBIDKNNSubList.contains(DBIDRef o)
boolean	ArrayStaticIntegerDBIDs.contains(DBIDRef o)
boolean	ArrayStaticIntegerDBIDs.Slice.contains(DBIDRef o)
boolean	DoubleIntegerDBIDSubList.contains(DBIDRef o)
boolean	ArrayModifiableIntegerDBIDs.contains(DBIDRef o)
boolean	ArrayModifiableIntegerDBIDs.Slice.contains(DBIDRef o)
boolean	UnmodifiableIntegerDBIDs.contains(DBIDRef o)
boolean	DoubleIntegerDBIDKNNHeap.contains(DBIDRef o)
void	TrivialDBIDFactory.deallocateSingleDBID(DBIDRef id)
void	SimpleDBIDFactory.deallocateSingleDBID(DBIDRef id)
void	ReusingDBIDFactory.deallocateSingleDBID(DBIDRef id)
boolean	AbstractIntegerDBIDFactory.equal(DBIDRef a, DBIDRef b)
DBIDVar	IntegerDBIDVar.from(DBIDDataStore store, DBIDRef ref)
int	IntegerDBIDRange.getOffset(DBIDRef dbid) For storage array offsets.
double	DoubleIntegerDBIDKNNHeap.insert(double distance, DBIDRef id)
void	ArrayModifiableIntegerDBIDs.insert(int i, DBIDRef newval)
int	IntegerDBIDRange.mapDBIDToOffset(DBIDRef dbid)
DBIDPair	AbstractIntegerDBIDFactory.newPair(DBIDRef first, DBIDRef second)
DoubleDBIDPair	AbstractIntegerDBIDFactory.newPair(double val, DBIDRef id)
DBIDVar	AbstractIntegerDBIDFactory.newVar(DBIDRef val)
boolean	FastutilIntOpenHashSetModifiableDBIDs.remove(DBIDRef o)
boolean	ArrayModifiableIntegerDBIDs.remove(DBIDRef o)
DBIDVar	IntegerDBIDVar.set(DBIDRef ref)
void	ArrayModifiableIntegerDBIDs.set(int index, DBIDRef element)
void	DoubleIntegerDBIDArrayList.Itr.setDBID(DBIDRef ref)
void	ArrayModifiableIntegerDBIDs.Itr.setDBID(DBIDRef val)
java.lang.String	AbstractIntegerDBIDFactory.toString(DBIDRef id)

Method parameters in de.lmu.ifi.dbs.elki.database.ids.integer with type arguments of type DBIDRef

Modifier and Type	Method and Description
private static int	IntegerDBIDArrayQuickSort.compare(IntegerDBIDVar i1, int p1, IntegerDBIDVar i2, int p2, java.util.Comparator<? super DBIDRef> comp) Compare two elements.
private static void	IntegerDBIDArrayQuickSort.quickSort(int[] data, int start, int end, java.util.Comparator<? super DBIDRef> comp, IntegerDBIDVar vl, IntegerDBIDVar vk, IntegerDBIDVar vr) Actual recursive sort function.
void	ArrayModifiableIntegerDBIDs.sort(java.util.Comparator<? super DBIDRef> comparator)
static void	IntegerDBIDArrayQuickSort.sort(int[] data, java.util.Comparator<? super DBIDRef> comp) Sort the full array using the given comparator.
static void	IntegerDBIDArrayQuickSort.sort(int[] data, int start, int end, java.util.Comparator<? super DBIDRef> comp) Sort the array using the given comparator.
void	ArrayModifiableIntegerDBIDs.sort(int start, int end, java.util.Comparator<? super DBIDRef> comparator)

Constructors in de.lmu.ifi.dbs.elki.database.ids.integer with parameters of type DBIDRef

Constructor and Description
IntegerDBIDVar(DBIDRef val) Constructor.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.distance

Methods in de.lmu.ifi.dbs.elki.database.query.distance with parameters of type DBIDRef

Modifier and Type	Method and Description
double	PrimitiveDistanceQuery.distance(DBIDRef id1, DBIDRef id2)
double	DistanceQuery.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
double	DBIDRangeDistanceQuery.distance(DBIDRef id1, DBIDRef id2)
double	DBIDDistanceQuery.distance(DBIDRef id1, DBIDRef id2)
double	PrimitiveDistanceQuery.distance(DBIDRef id1, O o2)
double	DistanceQuery.distance(DBIDRef id1, O o2) Returns the distance between the two objects specified by their object ids.
default double	DatabaseDistanceQuery.distance(DBIDRef id1, O o2)
double	PrimitiveDistanceQuery.distance(O o1, DBIDRef id2)
double	DistanceQuery.distance(O o1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
default double	DatabaseDistanceQuery.distance(O o1, DBIDRef id2)
double	SpatialPrimitiveDistanceQuery.minDist(SpatialComparable mbr, DBIDRef id)
double	SpatialDistanceQuery.minDist(SpatialComparable mbr, DBIDRef id) Computes the minimum distance between the given MBR and the FeatureVector object according to this distance function.
double	PrimitiveDistanceSimilarityQuery.similarity(DBIDRef id1, DBIDRef id2)
double	SpatialPrimitiveDistanceSimilarityQuery.similarity(DBIDRef id1, DBIDRef id2)
double	PrimitiveDistanceSimilarityQuery.similarity(DBIDRef id1, O o2)
double	SpatialPrimitiveDistanceSimilarityQuery.similarity(DBIDRef id1, O o2)
double	PrimitiveDistanceSimilarityQuery.similarity(O o1, DBIDRef id2)
double	SpatialPrimitiveDistanceSimilarityQuery.similarity(O o1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.knn

Methods in de.lmu.ifi.dbs.elki.database.query.knn with parameters of type DBIDRef

Modifier and Type	Method and Description
KNNList	KNNQuery.getKNNForDBID(DBIDRef id, int k) Get the k nearest neighbors for a particular id.
KNNList	LinearScanPrimitiveDistanceKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNList	LinearScanDistanceKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNList	LinearScanEuclideanDistanceKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNList	AbstractDistanceKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNList	PreprocessorKNNQuery.getKNNForDBID(DBIDRef id, int k)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.range

Methods in de.lmu.ifi.dbs.elki.database.query.range with parameters of type DBIDRef

Modifier and Type	Method and Description
DoubleDBIDList	RangeQuery.getRangeForDBID(DBIDRef id, double range) Get the neighbors for a particular id in a given query range
DoubleDBIDList	LinearScanDistanceRangeQuery.getRangeForDBID(DBIDRef id, double range)
DoubleDBIDList	LinearScanEuclideanDistanceRangeQuery.getRangeForDBID(DBIDRef id, double range)
DoubleDBIDList	AbstractSimilarityRangeQuery.getRangeForDBID(DBIDRef id, double range)
DoubleDBIDList	LinearScanSimilarityRangeQuery.getRangeForDBID(DBIDRef id, double range)
DoubleDBIDList	AbstractDistanceRangeQuery.getRangeForDBID(DBIDRef id, double range)
DoubleDBIDList	LinearScanPrimitiveSimilarityRangeQuery.getRangeForDBID(DBIDRef id, double range)
DoubleDBIDList	LinearScanPrimitiveDistanceRangeQuery.getRangeForDBID(DBIDRef id, double range)
void	RangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList result) Get the neighbors for a particular object in a given query range
void	LinearScanDistanceRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList neighbors)
void	LinearScanEuclideanDistanceRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList neighbors)
void	AbstractSimilarityRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList neighbors)
void	LinearScanSimilarityRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList neighbors)
void	AbstractDistanceRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList neighbors)
void	LinearScanPrimitiveSimilarityRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList neighbors)
void	LinearScanPrimitiveDistanceRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList neighbors)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.rknn

Methods in de.lmu.ifi.dbs.elki.database.query.rknn with parameters of type DBIDRef

Modifier and Type	Method and Description
DoubleDBIDList	RKNNQuery.getRKNNForDBID(DBIDRef id, int k) Get the reverse k nearest neighbors for a particular id.
DoubleDBIDList	LinearScanRKNNQuery.getRKNNForDBID(DBIDRef id, int k)
abstract DoubleDBIDList	AbstractRKNNQuery.getRKNNForDBID(DBIDRef id, int k)
DoubleDBIDList	PreprocessorRKNNQuery.getRKNNForDBID(DBIDRef id, int k)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.query.similarity

Methods in de.lmu.ifi.dbs.elki.database.query.similarity with parameters of type DBIDRef

Modifier and Type	Method and Description
double	PrimitiveSimilarityQuery.similarity(DBIDRef id1, DBIDRef id2)
double	SimilarityQuery.similarity(DBIDRef id1, DBIDRef id2) Returns the similarity between the two objects specified by their object ids.
double	PrimitiveSimilarityQuery.similarity(DBIDRef id1, O o2)
double	SimilarityQuery.similarity(DBIDRef id1, O o2) Returns the similarity between the two objects specified by their object ids.
default double	DatabaseSimilarityQuery.similarity(DBIDRef id1, O o2)
double	PrimitiveSimilarityQuery.similarity(O o1, DBIDRef id2)
double	SimilarityQuery.similarity(O o1, DBIDRef id2) Returns the similarity between the two objects specified by their object ids.
default double	DatabaseSimilarityQuery.similarity(O o1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.database.relation

Methods in de.lmu.ifi.dbs.elki.database.relation with parameters of type DBIDRef

Modifier and Type	Method and Description
void	DoubleRelation.Consumer.accept(DBIDRef idref, double val) Act on each value.
int	RelationUtil.AscendingByDoubleRelation.compare(DBIDRef id1, DBIDRef id2)
int	RelationUtil.DescendingByDoubleRelation.compare(DBIDRef id1, DBIDRef id2)
void	ModifiableRelation.delete(DBIDRef id) Delete an objects values.
void	MaterializedRelation.delete(DBIDRef id) Delete an objects values.
void	MaterializedDoubleRelation.delete(DBIDRef id) Delete an objects values.
double	DoubleRelation.doubleValue(DBIDRef id) Get the representation of an object.
double	MaterializedDoubleRelation.doubleValue(DBIDRef id)
default java.lang.Double	DoubleRelation.get(DBIDRef id) Deprecated. use DoubleRelation.doubleValue(de.lmu.ifi.dbs.elki.database.ids.DBIDRef) instead.
O	Relation.get(DBIDRef id) Get the representation of an object.
O	MaterializedRelation.get(DBIDRef id)
DBID	DBIDView.get(DBIDRef id)
OUT	ProjectedView.get(DBIDRef id)
O	ProxyView.get(DBIDRef id)
java.lang.String	ConvertToStringView.get(DBIDRef id)
void	DoubleRelation.insert(DBIDRef id, java.lang.Double val) Deprecated. use DoubleRelation.set(DBIDRef, double) instead.
void	MaterializedDoubleRelation.insert(DBIDRef id, java.lang.Double val) Deprecated.
void	ModifiableRelation.insert(DBIDRef id, O val) Set (or insert) an object representation.
void	MaterializedRelation.insert(DBIDRef id, O val)
void	DoubleRelation.set(DBIDRef id, double val) Set an object representation.
void	MaterializedDoubleRelation.set(DBIDRef id, double val)

Method parameters in de.lmu.ifi.dbs.elki.database.relation with type arguments of type DBIDRef

Modifier and Type	Method and Description
default void	Relation.forEach(java.util.function.BiConsumer<? super DBIDRef,? super O> action) Execute a function for each ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.distancefunction

Methods in de.lmu.ifi.dbs.elki.distance.distancefunction with parameters of type DBIDRef

Modifier and Type	Method and Description
double	DBIDDistanceFunction.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two objects specified by their object ids.
double	AbstractDBIDRangeDistanceFunction.distance(DBIDRef o1, DBIDRef o2)
double	RandomStableDistanceFunction.distance(DBIDRef o1, DBIDRef o2)
double	SharedNearestNeighborJaccardDistanceFunction.Instance.distance(DBIDRef id1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.distancefunction.adapter

Methods in de.lmu.ifi.dbs.elki.distance.distancefunction.adapter with parameters of type DBIDRef

Modifier and Type	Method and Description
double	AbstractSimilarityAdapter.Instance.distance(DBIDRef id1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.similarityfunction

Methods in de.lmu.ifi.dbs.elki.distance.similarityfunction with parameters of type DBIDRef

Modifier and Type	Method and Description
double	FractionalSharedNearestNeighborSimilarityFunction.Instance.similarity(DBIDRef id1, DBIDRef id2)
double	SharedNearestNeighborSimilarityFunction.Instance.similarity(DBIDRef id1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel

Methods in de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel with parameters of type DBIDRef

Modifier and Type	Method and Description
double	KernelMatrix.getDistance(DBIDRef o1, DBIDRef o2) Returns the kernel distance between the two specified objects.
int	KernelMatrix.DBIDMap.getOffset(DBIDRef id) Get the offset of the DBID in the range.
int	KernelMatrix.RangeMap.getOffset(DBIDRef id)
int	KernelMatrix.SortedArrayMap.getOffset(DBIDRef id)
double	KernelMatrix.getSimilarity(DBIDRef id1, DBIDRef id2) Get the kernel similarity for the given objects.
double	KernelMatrix.getSquaredDistance(DBIDRef id1, DBIDRef id2) Returns the squared kernel distance between the two specified objects.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.evaluation.scores.adapter

Fields in de.lmu.ifi.dbs.elki.evaluation.scores.adapter declared as DBIDRef

Modifier and Type	Field and Description
(package private) DBIDRef	FilteredDistanceResultAdapter.skip DBID to skip (usually: query object).

Methods in de.lmu.ifi.dbs.elki.evaluation.scores.adapter that return DBIDRef

Modifier and Type	Method and Description
DBIDRef	SimpleAdapter.getRef()
DBIDRef	DBIDRefIter.getRef() Get the current DBIDRef.
DBIDRef	DistanceResultAdapter.getRef()
DBIDRef	OutlierScoreAdapter.getRef()

Constructors in de.lmu.ifi.dbs.elki.evaluation.scores.adapter with parameters of type DBIDRef

Constructor and Description
FilteredDistanceResultAdapter(DoubleDBIDListIter iter, DBIDRef skip) Constructor

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index

Methods in de.lmu.ifi.dbs.elki.index with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	DynamicIndex.delete(DBIDRef id) Deletes the specified object from this index.
void	DynamicIndex.insert(DBIDRef id) Inserts the specified object into this index.
protected double	AbstractRefiningIndex.AbstractRangeQuery.refine(DBIDRef id, O q) Refinement distance computation.
protected double	AbstractRefiningIndex.AbstractKNNQuery.refine(DBIDRef id, O q) Refinement distance computation.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.distancematrix

Methods in de.lmu.ifi.dbs.elki.index.distancematrix with parameters of type DBIDRef

Modifier and Type	Method and Description
double	PrecomputedDistanceMatrix.PrecomputedDistanceQuery.distance(DBIDRef id1, DBIDRef id2)
double	PrecomputedDistanceMatrix.PrecomputedDistanceQuery.distance(DBIDRef id1, O o2)
double	PrecomputedDistanceMatrix.PrecomputedDistanceQuery.distance(O o1, DBIDRef id2)
KNNList	PrecomputedDistanceMatrix.PrecomputedKNNQuery.getKNNForDBID(DBIDRef id, int k)
DoubleDBIDList	PrecomputedSimilarityMatrix.PrecomputedSimilarityRangeQuery.getRangeForDBID(DBIDRef id, double range)
DoubleDBIDList	PrecomputedDistanceMatrix.PrecomputedRangeQuery.getRangeForDBID(DBIDRef id, double range)
void	PrecomputedSimilarityMatrix.PrecomputedSimilarityRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList result)
void	PrecomputedDistanceMatrix.PrecomputedRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList result)
double	PrecomputedSimilarityMatrix.PrecomputedSimilarityQuery.similarity(DBIDRef id1, DBIDRef id2)
double	PrecomputedSimilarityMatrix.PrecomputedSimilarityQuery.similarity(DBIDRef id1, O o2)
double	PrecomputedSimilarityMatrix.PrecomputedSimilarityQuery.similarity(O o1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.invertedlist

Methods in de.lmu.ifi.dbs.elki.index.invertedlist with parameters of type DBIDRef

Modifier and Type	Method and Description
private void	InMemoryInvertedIndex.indexDense(DBIDRef ref, V obj) Index a single (dense) instance.
private void	InMemoryInvertedIndex.indexSparse(DBIDRef ref, SparseNumberVector obj) Index a single (sparse) instance.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed.knn

Methods in de.lmu.ifi.dbs.elki.index.preprocessed.knn with parameters of type DBIDRef

Modifier and Type	Method and Description
private boolean	NNDescent.add(DBIDRef cur, DBIDRef cand, double distance) Add cand to cur's heap neighbors with distance
private void	NNDescent.addpair(WritableDataStore<HashSetModifiableDBIDs> newNeighbors, DBIDRef o1, DBIDRef o2)
boolean	MaterializeKNNPreprocessor.delete(DBIDRef id)
KNNList	AbstractMaterializeKNNPreprocessor.get(DBIDRef id) Get the k nearest neighbors.
KNNList	NaiveProjectedKNNPreprocessor.NaiveProjectedKNNQuery.getKNNForDBID(DBIDRef id, int k)
KNNList	SpacefillingKNNPreprocessor.SpaceFillingKNNQuery.getKNNForDBID(DBIDRef id, int k)
DoubleDBIDList	MaterializeKNNAndRKNNPreprocessor.getRKNN(DBIDRef id) Returns the materialized RkNNs of the specified id.
void	MaterializeKNNPreprocessor.insert(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed.localpca

Methods in de.lmu.ifi.dbs.elki.index.preprocessed.localpca with parameters of type DBIDRef

Modifier and Type	Method and Description
PCAFilteredResult	AbstractFilteredPCAIndex.getLocalProjection(DBIDRef objid)
PCAFilteredResult	FilteredLocalPCAIndex.getLocalProjection(DBIDRef objid) Get the precomputed local PCA for a particular object ID.
protected abstract DoubleDBIDList	AbstractFilteredPCAIndex.objectsForPCA(DBIDRef id) Returns the objects to be considered within the PCA for the specified query object.
protected KNNList	KNNQueryFilteredPCAIndex.objectsForPCA(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed.preference

Methods in de.lmu.ifi.dbs.elki.index.preprocessed.preference with parameters of type DBIDRef

Modifier and Type	Method and Description
private long[]	HiSCPreferenceVectorIndex.determinePreferenceVector(Relation<V> relation, DBIDRef id, DBIDs neighborIDs) Determines the preference vector according to the specified neighbor ids.
long[]	PreferenceVectorIndex.getPreferenceVector(DBIDRef id) Get the precomputed preference vector for a particular object ID.
long[]	AbstractPreferenceVectorIndex.getPreferenceVector(DBIDRef objid)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.preprocessed.snn

Methods in de.lmu.ifi.dbs.elki.index.preprocessed.snn with parameters of type DBIDRef

Modifier and Type	Method and Description
ArrayDBIDs	SharedNearestNeighborIndex.getNearestNeighborSet(DBIDRef id) Get the precomputed nearest neighbors
ArrayDBIDs	SharedNearestNeighborPreprocessor.getNearestNeighborSet(DBIDRef objid)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.projected

Methods in de.lmu.ifi.dbs.elki.index.projected with parameters of type DBIDRef

Modifier and Type	Method and Description
KNNList	ProjectedIndex.ProjectedKNNQuery.getKNNForDBID(DBIDRef id, int k)
DoubleDBIDList	ProjectedIndex.ProjectedRKNNQuery.getRKNNForDBID(DBIDRef id, int k)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.covertree

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.covertree with parameters of type DBIDRef

Modifier and Type	Method and Description
protected CoverTree.Node	CoverTree.bulkConstruct(DBIDRef cur, int maxScale, double parentDist, ModifiableDoubleDBIDList elems) Bulk-load the cover tree.
protected SimplifiedCoverTree.Node	SimplifiedCoverTree.bulkConstruct(DBIDRef cur, int maxScale, ModifiableDoubleDBIDList elems) Bulk-load the cover tree.
protected void	AbstractCoverTree.collectByCover(DBIDRef cur, ModifiableDoubleDBIDList candidates, double fmax, ModifiableDoubleDBIDList collect) Collect all elements with respect to a new routing object.
protected double	AbstractCoverTree.distance(DBIDRef a, DBIDRef b) Compute a distance (and count).
protected double	AbstractCoverTree.distance(O a, DBIDRef b) Compute a distance (and count).

Constructors in de.lmu.ifi.dbs.elki.index.tree.metrical.covertree with parameters of type DBIDRef

Constructor and Description
Node(DBIDRef r, double maxDist) Constructor.
Node(DBIDRef r, double maxDist, double parentDist) Constructor.
Node(DBIDRef r, double maxDist, DoubleDBIDList singletons) Constructor for leaf node.
Node(DBIDRef r, double maxDist, double parentDist, DoubleDBIDList singletons) Constructor for leaf node.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants with parameters of type DBIDRef

Modifier and Type	Method and Description
abstract double	AbstractMTree.distance(DBIDRef id1, DBIDRef id2) Returns the distance between the two specified ids.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees with parameters of type DBIDRef

Modifier and Type	Method and Description
double	AbstractMkTree.distance(DBIDRef id1, DBIDRef id2)
abstract DoubleDBIDList	AbstractMkTree.reverseKNNQuery(DBIDRef id, int k) Performs a reverse k-nearest neighbor query for the given object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp with parameters of type DBIDRef

Modifier and Type	Method and Description
DoubleDBIDList	MkAppTree.reverseKNNQuery(DBIDRef id, int k) Performs a reverse k-nearest neighbor query for the given object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop with parameters of type DBIDRef

Modifier and Type	Method and Description
private void	MkCoPTree.doReverseKNNQuery(int k, DBIDRef q, ModifiableDoubleDBIDList result, ModifiableDBIDs candidates) Performs a reverse knn query.
DoubleDBIDList	MkCoPTree.reverseKNNQuery(DBIDRef id, int k) Performs a reverse k-nearest neighbor query for the given object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	MkMaxTreeIndex.delete(DBIDRef id) Throws an UnsupportedOperationException since deletion of objects is not yet supported by an M-Tree.
private void	MkMaxTree.doReverseKNNQuery(DBIDRef q, MkMaxTreeNode<O> node, MkMaxEntry node_entry, ModifiableDoubleDBIDList result) Performs a reverse k-nearest neighbor query in the specified subtree for the given query object with k = AbstractMkTreeUnified.getKmax().
void	MkMaxTreeIndex.insert(DBIDRef id)
DoubleDBIDList	MkMaxTree.reverseKNNQuery(DBIDRef id, int k) Performs a reverse k-nearest neighbor query for the given object ID.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab with parameters of type DBIDRef

Modifier and Type	Method and Description
private void	MkTabTree.doReverseKNNQuery(int k, DBIDRef q, MkTabEntry node_entry, MkTabTreeNode<O> node, ModifiableDoubleDBIDList result) Performs a k-nearest neighbor query in the specified subtree for the given query object and the given parameter k.
DoubleDBIDList	MkTabTree.reverseKNNQuery(DBIDRef id, int k)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	MTreeIndex.delete(DBIDRef id) Throws an UnsupportedOperationException since deletion of objects is not yet supported by an M-Tree.
double	MTreeIndex.distance(DBIDRef id1, DBIDRef id2)
void	MTreeIndex.insert(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.query

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.query with parameters of type DBIDRef

Modifier and Type	Method and Description
DoubleDBIDList	MkTreeRKNNQuery.getRKNNForDBID(DBIDRef id, int k)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.kd

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.kd with parameters of type DBIDRef

Modifier and Type	Method and Description
int	MinimalisticMemoryKDTree.CountSortAccesses.compare(DBIDRef id1, DBIDRef id2)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants with parameters of type DBIDRef

Modifier and Type	Method and Description
protected IndexTreePath<E>	AbstractRStarTree.findPathToObject(IndexTreePath<E> subtree, SpatialComparable mbr, DBIDRef id) Returns the path to the leaf entry in the specified subtree that represents the data object with the specified mbr and id.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	DeLiCluTreeIndex.delete(DBIDRef id) Deletes the specified object from this index.
void	DeLiCluTreeIndex.insert(DBIDRef id) Inserts the specified real vector object into this index.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.flat

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.flat with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	FlatRStarTreeIndex.delete(DBIDRef id) Deletes the specified object from this index.
void	FlatRStarTreeIndex.insert(DBIDRef id) Inserts the specified real vector object into this index.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.query

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.query with parameters of type DBIDRef

Modifier and Type	Method and Description
KNNList	RStarTreeKNNQuery.getKNNForDBID(DBIDRef id, int k)
DoubleDBIDList	RStarTreeRangeQuery.getRangeForDBID(DBIDRef id, double range)
void	RStarTreeRangeQuery.getRangeForDBID(DBIDRef id, double range, ModifiableDoubleDBIDList result)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn with parameters of type DBIDRef

Modifier and Type	Method and Description
boolean	RdKNNTree.delete(DBIDRef id) Deletes the specified object from this index.
void	RdKNNTree.insert(DBIDRef id) Inserts the specified real vector object into this index.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar with parameters of type DBIDRef

Modifier and Type	Method and Description
protected SpatialPointLeafEntry	RStarTreeIndex.createNewLeafEntry(DBIDRef id) Create a new leaf entry.
boolean	RStarTreeIndex.delete(DBIDRef id) Deletes the specified object from this index.
void	RStarTreeIndex.insert(DBIDRef id) Inserts the specified reel vector object into this index.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.math.statistics.intrinsicdimensionality

Methods in de.lmu.ifi.dbs.elki.math.statistics.intrinsicdimensionality with parameters of type DBIDRef

Modifier and Type	Method and Description
default double	IntrinsicDimensionalityEstimator.estimate(KNNQuery<?> knnq, DBIDRef cur, int k) Estimate from a Reference Point, a KNNQuery and the neighborhood size k.
double	ALIDEstimator.estimate(KNNQuery<?> knnq, DBIDRef cur, int k)
default double	IntrinsicDimensionalityEstimator.estimate(RangeQuery<?> rnq, DBIDRef cur, double range) Estimate from a distance list.
double	ALIDEstimator.estimate(RangeQuery<?> rnq, DBIDRef cur, double range)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.parallel.processor

Methods in de.lmu.ifi.dbs.elki.parallel.processor with parameters of type DBIDRef

Modifier and Type	Method and Description
void	KNNProcessor.Instance.map(DBIDRef id)
void	DoubleMinMaxProcessor.Instance.map(DBIDRef id)
void	Processor.Instance.map(DBIDRef id) Process ("map") a single object
abstract void	AbstractDoubleProcessor.Instance.map(DBIDRef id)
void	KDistanceProcessor.Instance.map(DBIDRef id)
void	WriteDoubleDataStoreProcessor.Instance.map(DBIDRef id)
void	WriteIntegerDataStoreProcessor.Instance.map(DBIDRef id)
void	WriteDataStoreProcessor.Instance.map(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.result

Methods in de.lmu.ifi.dbs.elki.result with parameters of type DBIDRef

Modifier and Type	Method and Description
private java.lang.StringBuilder	KMLOutputHandler.makeDescription(java.util.Collection<Relation<?>> relations, DBIDRef id) Make an HTML description.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.result.textwriter

Methods in de.lmu.ifi.dbs.elki.result.textwriter with parameters of type DBIDRef

Modifier and Type	Method and Description
private void	TextWriter.printObject(TextWriterStream out, Database db, DBIDRef objID, java.util.List<Relation<?>> ra)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.utilities.datastructures.unionfind

Methods in de.lmu.ifi.dbs.elki.utilities.datastructures.unionfind with parameters of type DBIDRef

Modifier and Type	Method and Description
int	WeightedQuickUnionRangeDBIDs.find(DBIDRef element)
int	UnionFind.find(DBIDRef p) Find the component ID of an element.
int	WeightedQuickUnionStaticDBIDs.find(DBIDRef element)
boolean	WeightedQuickUnionRangeDBIDs.isConnected(DBIDRef first, DBIDRef second)
boolean	UnionFind.isConnected(DBIDRef p, DBIDRef q) Test if two components are connected.
boolean	WeightedQuickUnionStaticDBIDs.isConnected(DBIDRef first, DBIDRef second)
int	WeightedQuickUnionRangeDBIDs.union(DBIDRef first, DBIDRef second)
int	UnionFind.union(DBIDRef p, DBIDRef q) Join the components of elements p and q.
int	WeightedQuickUnionStaticDBIDs.union(DBIDRef first, DBIDRef second)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.style

Methods in de.lmu.ifi.dbs.elki.visualization.style with parameters of type DBIDRef

Modifier and Type	Method and Description
int	StylingPolicy.getColorForDBID(DBIDRef id) Get the color for an individual object.
int	ClusterStylingPolicy.getColorForDBID(DBIDRef id)
int	ClusterStylingPolicy.getStyleForDBID(DBIDRef id)
int	ClassStylingPolicy.getStyleForDBID(DBIDRef id) Get the style number for a particular object

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.visualizers.pairsegments

Methods in de.lmu.ifi.dbs.elki.visualization.visualizers.pairsegments with parameters of type DBIDRef

Modifier and Type	Method and Description
int	SegmentsStylingPolicy.getColorForDBID(DBIDRef id)
int	SegmentsStylingPolicy.getStyleForDBID(DBIDRef id)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.visualizers.parallel

Methods in de.lmu.ifi.dbs.elki.visualization.visualizers.parallel with parameters of type DBIDRef

Modifier and Type	Method and Description
private org.w3c.dom.Element	LineVisualization.Instance.drawLine(DBIDRef iter) Draw a single line.
private org.w3c.dom.Element	BoundingBoxVisualization.Instance.drawLine(DBIDRef iter) Draw a single line.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.selection

Methods in de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.selection with parameters of type DBIDRef

Modifier and Type	Method and Description
private org.w3c.dom.Element	SelectionLineVisualization.Instance.drawLine(DBIDRef iter) Draw a single line.

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot

Methods in de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot with parameters of type DBIDRef

Modifier and Type	Method and Description
protected abstract org.w3c.dom.Element	AbstractTooltipVisualization.makeTooltip(DBIDRef id, double x, double y, double dotsize) Make a tooltip Element for this id.
protected org.w3c.dom.Element	TooltipStringVisualization.Instance.makeTooltip(DBIDRef id, double x, double y, double dotsize)
protected org.w3c.dom.Element	TooltipScoreVisualization.Instance.makeTooltip(DBIDRef id, double x, double y, double dotsize)

Uses of DBIDRef in de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.outlier

Methods in de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.outlier with parameters of type DBIDRef

Modifier and Type	Method and Description
protected double	BubbleVisualization.Instance.getScaledForId(DBIDRef id) Convenience method to apply scalings in the right order.

Uses of DBIDRef in tutorial.clustering

Methods in tutorial.clustering with parameters of type DBIDRef

Modifier and Type	Method and Description
protected void	SameSizeKMeansAlgorithm.transfer(WritableDataStore<SameSizeKMeansAlgorithm.Meta> metas, SameSizeKMeansAlgorithm.Meta meta, ModifiableDBIDs src, ModifiableDBIDs dst, DBIDRef id, int dstnum) Transfer a single element from one cluster to another.