See: Description
Package | Description |
---|---|
de.lmu.ifi.dbs.elki.algorithm |
Algorithms suitable as a task for the
KDDTask main routine. |
de.lmu.ifi.dbs.elki.algorithm.benchmark |
Benchmarking pseudo algorithms.
|
de.lmu.ifi.dbs.elki.algorithm.clustering |
Clustering algorithms.
|
de.lmu.ifi.dbs.elki.algorithm.clustering.affinitypropagation |
Affinity Propagation (AP) clustering.
|
de.lmu.ifi.dbs.elki.algorithm.clustering.biclustering |
Biclustering algorithms.
|
de.lmu.ifi.dbs.elki.algorithm.clustering.correlation |
Correlation clustering algorithms
|
de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.cash |
Helper classes for the
CASH algorithm. |
de.lmu.ifi.dbs.elki.algorithm.clustering.gdbscan |
Generalized DBSCAN.
|
de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical | |
de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans |
K-means clustering and variations.
|
de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.quality |
Quality measures for k-Means results.
|
de.lmu.ifi.dbs.elki.algorithm.clustering.onedimensional |
Clustering algorithms for one-dimensional data.
|
de.lmu.ifi.dbs.elki.algorithm.clustering.subspace |
Axis-parallel subspace clustering algorithms
The clustering algorithms in this package are instances of both, projected clustering algorithms or
subspace clustering algorithms according to the classical but somewhat obsolete classification schema
of clustering algorithms for axis-parallel subspaces.
|
de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.clique |
Helper classes for the
CLIQUE algorithm. |
de.lmu.ifi.dbs.elki.algorithm.clustering.trivial |
Trivial clustering algorithms: all in one, no clusters, label clusterings
These methods are mostly useful for providing a reference result in evaluation.
|
de.lmu.ifi.dbs.elki.algorithm.outlier |
Outlier detection algorithms
|
de.lmu.ifi.dbs.elki.algorithm.outlier.lof |
LOF family of outlier detection algorithms.
|
de.lmu.ifi.dbs.elki.algorithm.outlier.meta |
Meta outlier detection algorithms: external scores, score rescaling.
|
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial |
Spatial outlier detection algorithms
|
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood |
Spatial outlier neighborhood classes
|
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood.weighted |
Weighted Neighborhood definitions.
|
de.lmu.ifi.dbs.elki.algorithm.outlier.subspace |
Subspace outlier detection methods.
|
de.lmu.ifi.dbs.elki.algorithm.outlier.trivial |
Trivial outlier detection algorithms: no outliers, all outliers, label outliers.
|
de.lmu.ifi.dbs.elki.algorithm.statistics |
Statistical analysis algorithms
The algorithms in this package perform statistical analysis of the data
(e.g. compute distributions, distance distributions etc.)
|
Package | Description |
---|---|
de.lmu.ifi.dbs.elki.data |
Basic classes for different data types, database object types and label types.
|
de.lmu.ifi.dbs.elki.data.images |
Package for processing image data (e.g. compute color histograms)
|
de.lmu.ifi.dbs.elki.data.model |
Cluster models classes for various algorithms.
|
de.lmu.ifi.dbs.elki.data.projection |
Data projections.
|
de.lmu.ifi.dbs.elki.data.spatial |
Spatial data types - interfaces and utilities.
|
de.lmu.ifi.dbs.elki.data.synthetic |
Generators for synthetic data sets
|
de.lmu.ifi.dbs.elki.data.synthetic.bymodel |
Generator using a distribution model specified in an XML configuration file.
|
de.lmu.ifi.dbs.elki.data.type |
Data type information, also used for type restrictions.
|
de.lmu.ifi.dbs.elki.distance | |
de.lmu.ifi.dbs.elki.distance.distancefunction |
Distance functions for use within ELKI.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.adapter |
Distance functions deriving distances from e.g. similarity measures
|
de.lmu.ifi.dbs.elki.distance.distancefunction.colorhistogram |
Distance functions using correlations.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation |
Distance functions using correlations.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.external |
Distance functions using external data sources.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.geo |
Geographic (earth) distance functions.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.histogram |
Distance functions for one-dimensional histograms.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.minkowski |
Minkowski space L_p norms such as the popular Euclidean and Manhattan distances.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.probabilistic |
Distance from probability theory, mostly divergences such as K-L-divergence, J-divergence.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.strings |
Distance functions for strings.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.subspace |
Distance functions based on subspaces.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.timeseries |
Distance functions designed for time series.
|
de.lmu.ifi.dbs.elki.distance.distanceresultlist |
Classes for building and storing the results of distance-based queries
|
de.lmu.ifi.dbs.elki.distance.distancevalue |
Distance values, i.e. object storing an actual distance value along with
comparison functions and value parsers.
|
de.lmu.ifi.dbs.elki.distance.similarityfunction |
Similarity functions.
|
de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel |
Kernel functions.
|
Package | Description |
---|---|
de.lmu.ifi.dbs.elki.evaluation |
Functionality for the evaluation of algorithms.
|
de.lmu.ifi.dbs.elki.evaluation.clustering |
Evaluation of clustering results.
|
de.lmu.ifi.dbs.elki.evaluation.clustering.pairsegments |
Pair-segment analysis of multiple clusterings.
|
de.lmu.ifi.dbs.elki.evaluation.histogram |
Functionality for the evaluation of algorithms using histograms.
|
de.lmu.ifi.dbs.elki.evaluation.index |
Simple index evaluation methods
|
de.lmu.ifi.dbs.elki.evaluation.outlier |
Evaluate an outlier score using a misclassification based cost model.
|
de.lmu.ifi.dbs.elki.evaluation.roc |
Evaluation of rankings using ROC AUC (Receiver Operation Characteristics - Area Under Curve)
|
de.lmu.ifi.dbs.elki.evaluation.similaritymatrix |
Render a distance matrix to visualize a clustering-distance-combination.
|
Package | Description |
---|---|
de.lmu.ifi.dbs.elki.gui |
Graphical User Interfaces for ELKI
|
de.lmu.ifi.dbs.elki.gui.configurator |
Configurator components
|
de.lmu.ifi.dbs.elki.gui.icons |
Icons for ELKI GUI.
|
de.lmu.ifi.dbs.elki.gui.minigui |
A very simple UI to build ELKI command lines.
|
de.lmu.ifi.dbs.elki.gui.multistep |
Multi-step GUI for ELKI
|
de.lmu.ifi.dbs.elki.gui.multistep.panels |
Panels for the multi-step GUI
|
de.lmu.ifi.dbs.elki.gui.util |
Utility classes for GUIs (e.g. a class to display a logging panel)
|
de.lmu.ifi.dbs.elki.visualization |
Visualization package of ELKI.
|
de.lmu.ifi.dbs.elki.visualization.batikutil |
Commonly used functionality useful for Apache Batik.
|
de.lmu.ifi.dbs.elki.visualization.colors |
Color scheme handling for ELKI.
|
de.lmu.ifi.dbs.elki.visualization.css |
Managing CSS styles / classes.
|
de.lmu.ifi.dbs.elki.visualization.gui |
Package to provide a visualization GUI.
|
de.lmu.ifi.dbs.elki.visualization.gui.detail |
Classes for managing a detail view.
|
de.lmu.ifi.dbs.elki.visualization.gui.overview |
Classes for managing the overview plot.
|
de.lmu.ifi.dbs.elki.visualization.opticsplot |
Code for drawing OPTICS plots
|
de.lmu.ifi.dbs.elki.visualization.projections |
Visualization projections
|
de.lmu.ifi.dbs.elki.visualization.projector |
Projectors are responsible for finding appropriate projections for data relations.
|
de.lmu.ifi.dbs.elki.visualization.savedialog |
Save dialog for SVG plots.
|
de.lmu.ifi.dbs.elki.visualization.style |
Style management for ELKI visualizations.
|
de.lmu.ifi.dbs.elki.visualization.style.lines |
Generate line styles for plotting in CSS
|
de.lmu.ifi.dbs.elki.visualization.style.marker |
Draw plot markers
|
de.lmu.ifi.dbs.elki.visualization.svg |
Base SVG functionality (generation, markers, thumbnails, export, ...).
|
de.lmu.ifi.dbs.elki.visualization.visualizers |
Visualizers for various results
|
de.lmu.ifi.dbs.elki.visualization.visualizers.histogram |
Visualizers based on 1D projected histograms.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.optics |
Visualizers that do work on OPTICS plots
|
de.lmu.ifi.dbs.elki.visualization.visualizers.pairsegments |
Visualizers for inspecting cluster differences using pair counting segments.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.parallel |
Visualizers based on parallel coordinates.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.cluster |
Visualizers for clustering results based on parallel coordinates.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.index |
Visualizers for index structure based on parallel coordinates.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.parallel.selection |
Visualizers for object selection based on parallel projections.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot |
Visualizers based on scatterplots.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.cluster |
Visualizers for clustering results based on 2D projections.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.density |
Visualizers for data set density in a scatterplot projection.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.index |
Visualizers for index structures based on 2D projections.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.outlier |
Visualizers for outlier scores based on 2D projections.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.scatterplot.selection |
Visualizers for object selection based on 2D projections.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.thumbs |
Thumbnail "Visualizers" (that take care of refreshing thumbnails)
|
de.lmu.ifi.dbs.elki.visualization.visualizers.visunproj |
Visualizers that do not use a particular projection.
|
Package | Description |
---|---|
de.lmu.ifi.dbs.elki |
ELKI framework "Environment for Developing KDD-Applications Supported by Index-Structures"
KDDTask is the main class of the ELKI-Framework
for command-line interaction. |
de.lmu.ifi.dbs.elki.application |
Base classes for stand alone applications.
|
de.lmu.ifi.dbs.elki.application.cache |
Utility applications for the persistence layer such as distance cache builders.
|
de.lmu.ifi.dbs.elki.application.geo |
Application for exploring geo data.
|
de.lmu.ifi.dbs.elki.application.greedyensemble |
Greedy ensembles for outlier detection.
|
de.lmu.ifi.dbs.elki.application.internal |
Internal utilities for development.
|
de.lmu.ifi.dbs.elki.application.jsmap |
JavaScript based map client - server architecture.
|
de.lmu.ifi.dbs.elki.logging |
Logging facility for controlling logging behavior of the complete framework.
|
de.lmu.ifi.dbs.elki.logging.progress |
Progress status objects (for UI)
|
de.lmu.ifi.dbs.elki.logging.statistics |
Classes for logging various statistics.
|
de.lmu.ifi.dbs.elki.math |
Mathematical operations and utilities used throughout the framework.
|
de.lmu.ifi.dbs.elki.math.dimensionsimilarity |
Functions to compute the similarity of dimensions (or the interestingness of the combination).
|
de.lmu.ifi.dbs.elki.math.geodesy | |
de.lmu.ifi.dbs.elki.math.geometry |
Algorithms from computational geometry.
|
de.lmu.ifi.dbs.elki.math.linearalgebra |
Linear Algebra package provides classes and computational methods for operations on matrices.
|
de.lmu.ifi.dbs.elki.math.linearalgebra.fitting |
Function to numerically fit a function (such as a
Gaussian distribution
to given data. |
de.lmu.ifi.dbs.elki.math.linearalgebra.pca |
Principal Component Analysis (PCA) and Eigenvector processing.
|
de.lmu.ifi.dbs.elki.math.linearalgebra.pca.weightfunctions |
Weight functions used in weighted PCA via
WeightedCovarianceMatrixBuilder |
de.lmu.ifi.dbs.elki.math.linearalgebra.randomprojections |
Random projection families.
|
de.lmu.ifi.dbs.elki.math.scales |
Scales handling for plotting.
|
de.lmu.ifi.dbs.elki.math.spacefillingcurves |
Space filling curves.
|
de.lmu.ifi.dbs.elki.math.statistics |
Statistical tests and methods.
|
de.lmu.ifi.dbs.elki.math.statistics.distribution |
Standard distributions, with random generation functionalities.
|
de.lmu.ifi.dbs.elki.math.statistics.distribution.estimator |
Estimators for statistical distributions.
|
de.lmu.ifi.dbs.elki.math.statistics.distribution.estimator.meta |
Meta estimators: estimators that do not actually estimate themselves, but instead use other estimators, e.g. on a trimmed data set, or as an ensemble.
|
de.lmu.ifi.dbs.elki.math.statistics.kernelfunctions |
Kernel functions from statistics.
|
de.lmu.ifi.dbs.elki.math.statistics.tests |
Statistical tests.
|
de.lmu.ifi.dbs.elki.result |
Result types, representation and handling
|
de.lmu.ifi.dbs.elki.result.optics |
Result classes for OPTICS.
|
de.lmu.ifi.dbs.elki.result.outlier |
Outlier result classes
|
de.lmu.ifi.dbs.elki.result.textwriter |
Text serialization (CSV, Gnuplot, Console, ...)
|
de.lmu.ifi.dbs.elki.result.textwriter.naming |
Naming schemes for clusters (for output when an algorithm doesn't generate cluster names).
|
de.lmu.ifi.dbs.elki.result.textwriter.writers |
Serialization handlers for individual data types.
|
de.lmu.ifi.dbs.elki.utilities |
Utility and helper classes - commonly used data structures, output formatting, exceptions, ...
|
de.lmu.ifi.dbs.elki.utilities.datastructures |
Basic memory structures such as heaps and object hierarchies.
|
de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike |
Common API for accessing objects that are "array-like", including lists, numerical vectors, database vectors and arrays.
|
de.lmu.ifi.dbs.elki.utilities.datastructures.arrays |
Utilities for arrays: advanced sorting for primitvie arrays.
|
de.lmu.ifi.dbs.elki.utilities.datastructures.heap |
Heap structures and variations such as bounded priority heaps.
|
de.lmu.ifi.dbs.elki.utilities.datastructures.hierarchy |
Delegate implementation of a hierarchy.
|
de.lmu.ifi.dbs.elki.utilities.datastructures.histogram |
Classes for computing histograms.
|
de.lmu.ifi.dbs.elki.utilities.datastructures.iterator |
ELKI Iterator API.
|
de.lmu.ifi.dbs.elki.utilities.documentation |
Documentation utilities: Annotations for Title, Description, Reference
|
de.lmu.ifi.dbs.elki.utilities.ensemble |
Utility classes for simple ensembles.
|
de.lmu.ifi.dbs.elki.utilities.exceptions |
Exception classes and common exception messages.
|
de.lmu.ifi.dbs.elki.utilities.optionhandling |
Parameter handling and option descriptions.
|
de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints |
Constraints allow to restrict possible values for parameters.
|
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization |
Configuration managers
See the
de.lmu.ifi.dbs.elki.utilities.optionhandling package for documentation! |
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters |
Classes for various typed parameters.
|
de.lmu.ifi.dbs.elki.utilities.pairs |
Pairs and triples utility classes.
|
de.lmu.ifi.dbs.elki.utilities.referencepoints |
Package containing strategies to obtain reference points
Shared code for various algorithms that use reference points.
|
de.lmu.ifi.dbs.elki.utilities.scaling |
Scaling functions: linear, logarithmic, gamma, clipping, ...
|
de.lmu.ifi.dbs.elki.utilities.scaling.outlier |
Scaling of Outlier scores, that require a statistical analysis of the occurring values
|
de.lmu.ifi.dbs.elki.utilities.xml |
XML and XHTML utilities.
|
de.lmu.ifi.dbs.elki.workflow |
Work flow packages, e.g. following the usual KDD model, closely related to CRISP-DM
|
Package | Description |
---|---|
tutorial |
Classes for ELKI tutorials.
|
tutorial.clustering |
Classes from the tutorial on implementing a custom k-means variation.
|
tutorial.distancefunction |
Classes from the tutorial on implementing distance functions.
|
tutorial.outlier |