| de.lmu.ifi.dbs.elki.database.ids.distance.ModifiableDoubleDistanceDBIDList.add(DoubleDistance, DBIDRef)
 Pass a double value instead. 
 | 
| de.lmu.ifi.dbs.elki.database.ids.distance.DoubleDistanceDBIDPairList.add(DoubleDistance, DBIDRef)
 Pass a double value instead. 
 | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDList.add(DoubleDistance, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDPairList.add(DoubleDistance, DBIDRef) | 
| de.lmu.ifi.dbs.elki.math.spacefillingcurves.ZCurveTransformer.asBigInteger(NumberVector>) | 
| de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.AbstractMkTree.batchNN(N, DBIDs, int)
 Change to use by-object NN lookups instead. 
 | 
| de.lmu.ifi.dbs.elki.logging.progress.StepProgress.beginStep(int, String) | 
| de.lmu.ifi.dbs.elki.data.SparseNumberVector.byteValue(int)
 | 
| de.lmu.ifi.dbs.elki.utilities.DatabaseUtil.dimensionality(Relation)
 | 
| de.lmu.ifi.dbs.elki.data.SparseByteVector.doubleValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseFloatVector.doubleValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseNumberVector.doubleValue(int)
 | 
| de.lmu.ifi.dbs.elki.data.SparseDoubleVector.doubleValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseShortVector.doubleValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseIntegerVector.doubleValue(int) | 
| de.lmu.ifi.dbs.elki.database.ids.DBID.equals(Object) | 
| de.lmu.ifi.dbs.elki.database.ids.DBIDRef.equals(Object) | 
| de.lmu.ifi.dbs.elki.database.ids.integer.IntegerDBID.equals(Object) | 
| de.lmu.ifi.dbs.elki.evaluation.roc.ROC.SimpleAdapter.equals(Object) | 
| de.lmu.ifi.dbs.elki.evaluation.roc.ROC.DistanceResultAdapter.equals(Object) | 
| de.lmu.ifi.dbs.elki.evaluation.roc.ROC.OutlierScoreAdapter.equals(Object) | 
| de.lmu.ifi.dbs.elki.data.SparseNumberVector.floatValue(int)
 | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ByteSerializer.fromByteBuffer(ByteBuffer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ShortSerializer.fromByteBuffer(ByteBuffer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.IntegerSerializer.fromByteBuffer(ByteBuffer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.LongSerializer.fromByteBuffer(ByteBuffer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.FloatSerializer.fromByteBuffer(ByteBuffer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.DoubleSerializer.fromByteBuffer(ByteBuffer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.VarintSerializer.fromByteBuffer(ByteBuffer) | 
| de.lmu.ifi.dbs.elki.database.datastore.DoubleDataStore.get(DBIDRef)
 | 
| de.lmu.ifi.dbs.elki.database.datastore.IntegerDataStore.get(DBIDRef)
 | 
| de.lmu.ifi.dbs.elki.database.datastore.DoubleDistanceDataStore.get(DBIDRef)
 | 
| de.lmu.ifi.dbs.elki.database.datastore.DBIDDataStore.get(DBIDRef)
 | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDBIDStore.get(DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDoubleDistanceStore.get(DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDIntegerStore.get(DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDoubleDistanceStore.get(DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayIntegerStore.get(DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDBIDStore.get(DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDoubleStore.get(DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDoubleStore.get(DBIDRef) | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.DoubleArrayAdapter.get(double[], int) | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.FloatArrayAdapter.get(float[], int) | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.FlatMatrixAdapter.get(Matrix, int) | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.NumberVectorAdapter.get(NumberVector, int) | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.TDoubleListAdapter.get(TDoubleList, int) | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.arraylike.VectorAdapter.get(Vector, int) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ByteSerializer.getByteSize(Byte) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.DoubleSerializer.getByteSize(Double) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.FloatSerializer.getByteSize(Float) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.IntegerSerializer.getByteSize(Integer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.VarintSerializer.getByteSize(Integer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.LongSerializer.getByteSize(Long) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ShortSerializer.getByteSize(Short) | 
| de.lmu.ifi.dbs.elki.database.ids.distance.DoubleDistanceDBIDListIter.getDistance()
 | 
| de.lmu.ifi.dbs.elki.database.ids.distance.DoubleDistanceDBIDPairList.Itr.getDistance() | 
| de.lmu.ifi.dbs.elki.database.ids.distance.DoubleDistanceDBIDPair.getDistance()
 | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceDBIDPairKNNListHeap.Itr.getDistance()
 | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceDBIDPairKNNList.Itr.getDistance()
 | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceKNNSubList.Itr.getDistance() | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDList.Itr.getDistance() | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDPairList.Itr.getDistance() | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDPairKNNListHeap.Itr.getDistance()
 | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDPair.getDistance() | 
| de.lmu.ifi.dbs.elki.index.tree.AbstractNode.getEntries()
 Using this method means an extra copy - usually at the cost of
             performance. 
 | 
| de.lmu.ifi.dbs.elki.index.tree.IndexTree.getFile() | 
| de.lmu.ifi.dbs.elki.database.ids.DoubleDBIDPair.getFirst()
 | 
| de.lmu.ifi.dbs.elki.database.ids.integer.IntegerDoubleDBIDPair.getFirst() | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.heap.DoublePriorityObject.getFirst() | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.heap.IntegerPriorityObject.getFirst() | 
| de.lmu.ifi.dbs.elki.utilities.pairs.IntDoublePair.getFirst()
 use pair.first to avoid boxing! 
 | 
| de.lmu.ifi.dbs.elki.utilities.pairs.DoubleIntPair.getFirst()
 use pair.first to avoid boxing! 
 | 
| de.lmu.ifi.dbs.elki.utilities.pairs.DoubleObjPair.getFirst()
 use pair.first to avoid boxing! 
 | 
| de.lmu.ifi.dbs.elki.utilities.pairs.DoubleDoublePair.getFirst()
 use pair.first to avoid boxing! 
 | 
| de.lmu.ifi.dbs.elki.utilities.pairs.IntIntPair.getFirst()
 use pair.first to avoid boxing! 
 | 
| de.lmu.ifi.dbs.elki.database.ids.distance.DoubleDistanceKNNList.getKNNDistance()
 use doubleKNNDistance()! 
 | 
| de.lmu.ifi.dbs.elki.database.ids.distance.DoubleDistanceKNNHeap.getKNNDistance()
 if you know your distances are double-valued, you should be
             using the primitive type. 
 | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceDBIDPairKNNListHeap.getKNNDistance() | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceDBIDPairKNNList.getKNNDistance() | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceDBIDPairKNNHeap.getKNNDistance()
 if you know your distances are double-valued, you should be
             using the primitive type. 
 | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceKNNSubList.getKNNDistance() | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDKNNList.getKNNDistance()
 | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDKNNHeap.getKNNDistance() | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDPairKNNListHeap.getKNNDistance() | 
| de.lmu.ifi.dbs.elki.algorithm.clustering.biclustering.AbstractBiclustering.getRowDBID(int)
 Expensive! 
 | 
de.lmu.ifi.dbs.elki.database.ids.DoubleDBIDPair.getSecond()
Avoid autoboxing! Use DBIDRef interface! 
 | 
| de.lmu.ifi.dbs.elki.database.ids.integer.IntegerDoubleDBIDPair.getSecond() | 
| de.lmu.ifi.dbs.elki.utilities.pairs.IntDoublePair.getSecond()
 use pair.first to avoid boxing! 
 | 
| de.lmu.ifi.dbs.elki.utilities.pairs.DoubleIntPair.getSecond()
 use pair.first to avoid boxing! 
 | 
| de.lmu.ifi.dbs.elki.utilities.pairs.DoubleDoublePair.getSecond()
 use pair.first to avoid boxing! 
 | 
| de.lmu.ifi.dbs.elki.utilities.pairs.IntIntPair.getSecond()
 use pair.first to avoid boxing! 
 | 
| de.lmu.ifi.dbs.elki.distance.distancefunction.subspace.DimensionSelectingDistanceFunction.getSelectedDimensions() | 
| de.lmu.ifi.dbs.elki.visualization.svg.SVGPlot.getStyle()
 Contents will be overwritten by CSS class manager! 
 | 
| de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel.KernelMatrix.getSubColumn(DBIDRef, DBIDs) | 
| de.lmu.ifi.dbs.elki.data.ByteVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseByteVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseFloatVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.FloatVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.DoubleVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.OneDimensionalDoubleVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseDoubleVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseShortVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseIntegerVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.IntegerVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.NumberVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.ShortVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.data.BitVector.getValue(int) | 
| de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialPointLeafEntry.getValue(int) | 
| de.lmu.ifi.dbs.elki.math.linearalgebra.Vector.getValue(int) | 
| de.lmu.ifi.dbs.elki.database.ids.DBIDRef.hashCode()
 Do not use this hash code. Some implementations will not offer
             stable hash codes! 
 | 
| de.lmu.ifi.dbs.elki.evaluation.roc.ROC.SimpleAdapter.hashCode() | 
| de.lmu.ifi.dbs.elki.evaluation.roc.ROC.DistanceResultAdapter.hashCode() | 
| de.lmu.ifi.dbs.elki.evaluation.roc.ROC.OutlierScoreAdapter.hashCode() | 
| de.lmu.ifi.dbs.elki.persistent.PersistentPageFile.increaseReadAccess() | 
| de.lmu.ifi.dbs.elki.persistent.PersistentPageFile.increaseWriteAccess() | 
| de.lmu.ifi.dbs.elki.database.ids.distance.DoubleDistanceKNNHeap.insert(Double, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceDBIDPairKNNListHeap.insert(Double, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceDBIDPairKNNHeap.insert(Double, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDKNNHeap.insert(Double, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDPairKNNListHeap.insert(Double, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDSortedKNNList.insert(Double, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.distance.DoubleDistanceKNNHeap.insert(DoubleDistance, DBIDRef)
 if you know your distances are double-valued, you should be
             using the primitive type. 
 | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceDBIDPairKNNListHeap.insert(DoubleDistance, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.generic.DoubleDistanceDBIDPairKNNHeap.insert(DoubleDistance, DBIDRef)
 if you know your distances are double-valued, you should be
             using the primitive type. 
 | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDKNNHeap.insert(DoubleDistance, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDPairKNNListHeap.insert(DoubleDistance, DBIDRef) | 
| de.lmu.ifi.dbs.elki.database.ids.integer.DoubleDistanceIntegerDBIDSortedKNNList.insert(DoubleDistance, DBIDRef) | 
| de.lmu.ifi.dbs.elki.data.SparseNumberVector.intValue(int)
 | 
| de.lmu.ifi.dbs.elki.data.SparseIntegerVector.intValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseByteVector.longValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseFloatVector.longValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseNumberVector.longValue(int)
 | 
| de.lmu.ifi.dbs.elki.data.SparseDoubleVector.longValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseShortVector.longValue(int) | 
| de.lmu.ifi.dbs.elki.data.SparseIntegerVector.longValue(int) | 
| de.lmu.ifi.dbs.elki.utilities.Util.mixHashCodes(int) | 
| de.lmu.ifi.dbs.elki.database.datastore.WritableDBIDDataStore.put(DBIDRef, DBID)
 | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDBIDStore.put(DBIDRef, DBID) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDBIDStore.put(DBIDRef, DBID) | 
| de.lmu.ifi.dbs.elki.database.datastore.WritableDoubleDataStore.put(DBIDRef, Double)
 | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDoubleStore.put(DBIDRef, Double) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDoubleStore.put(DBIDRef, Double) | 
| de.lmu.ifi.dbs.elki.database.datastore.WritableDoubleDistanceDataStore.put(DBIDRef, DoubleDistance)
 | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayDoubleDistanceStore.put(DBIDRef, DoubleDistance) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDDoubleDistanceStore.put(DBIDRef, DoubleDistance) | 
| de.lmu.ifi.dbs.elki.database.datastore.WritableIntegerDataStore.put(DBIDRef, Integer)
 | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.MapIntegerDBIDIntegerStore.put(DBIDRef, Integer) | 
| de.lmu.ifi.dbs.elki.database.datastore.memory.ArrayIntegerStore.put(DBIDRef, Integer) | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.histogram.DoubleArrayStaticHistogram.putData(double, double[])
 | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.histogram.IntArrayStaticHistogram.putData(double, int[])
 | 
| de.lmu.ifi.dbs.elki.utilities.datastructures.histogram.LongArrayStaticHistogram.putData(double, long[])
 | 
| de.lmu.ifi.dbs.elki.math.statistics.distribution.ExponentiallyModifiedGaussianDistribution.quantile(double)
 Not yet implemented! 
 | 
| de.lmu.ifi.dbs.elki.math.statistics.distribution.WaldDistribution.quantile(double)
 NOT YET IMPLEMENTED. 
 | 
| de.lmu.ifi.dbs.elki.math.statistics.distribution.WaldDistribution.quantile(double, double, double)
 NOT YET IMPLEMENTED. 
 | 
| de.lmu.ifi.dbs.elki.math.statistics.distribution.ExponentiallyModifiedGaussianDistribution.quantile(double, double, double, double)
 Not yet implemented! 
 | 
| de.lmu.ifi.dbs.elki.logging.progress.StepProgress.setCompleted() | 
| de.lmu.ifi.dbs.elki.logging.progress.IndefiniteProgress.setCompleted() | 
| de.lmu.ifi.dbs.elki.visualization.batikutil.JSVGSynchronizedCanvas.setDocument(Document)
 | 
| de.lmu.ifi.dbs.elki.visualization.batikutil.JSVGSynchronizedCanvas.setSVGDocument(SVGDocument)
 | 
| de.lmu.ifi.dbs.elki.data.SparseNumberVector.shortValue(int)
 | 
| de.lmu.ifi.dbs.elki.data.SparseShortVector.shortValue(int) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ByteSerializer.toByteBuffer(ByteBuffer, Byte) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.DoubleSerializer.toByteBuffer(ByteBuffer, Double) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.FloatSerializer.toByteBuffer(ByteBuffer, Float) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.IntegerSerializer.toByteBuffer(ByteBuffer, Integer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.VarintSerializer.toByteBuffer(ByteBuffer, Integer) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.LongSerializer.toByteBuffer(ByteBuffer, Long) | 
| de.lmu.ifi.dbs.elki.persistent.ByteArrayUtil.ShortSerializer.toByteBuffer(ByteBuffer, Short) |