See: Description
Package | Description |
---|---|
de.lmu.ifi.dbs.elki.algorithm |
Algorithms suitable as a task for the
KDDTask main routine. |
de.lmu.ifi.dbs.elki.algorithm.clustering |
Clustering algorithms
Clustering algorithms are supposed to implement the
Algorithm -Interface. |
de.lmu.ifi.dbs.elki.algorithm.clustering.correlation |
Correlation clustering algorithms
|
de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.cash |
Helper classes for the
CASH algorithm. |
de.lmu.ifi.dbs.elki.algorithm.clustering.subspace |
Axis-parallel subspace clustering algorithms
The clustering algorithms in this package are instances of both, projected clustering algorithms or
subspace clustering algorithms according to the classical but somewhat obsolete classification schema
of clustering algorithms for axis-parallel subspaces.
|
de.lmu.ifi.dbs.elki.algorithm.clustering.subspace.clique |
Helper classes for the
CLIQUE algorithm. |
de.lmu.ifi.dbs.elki.algorithm.clustering.trivial |
Trivial clustering algorithms: all in one, no clusters, label clusterings
These methods are mostly useful for providing a reference result in evaluation.
|
de.lmu.ifi.dbs.elki.algorithm.outlier |
Outlier detection algorithms
|
de.lmu.ifi.dbs.elki.algorithm.outlier.meta |
Meta outlier detection algorithms: external scores, score rescaling.
|
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial |
Spatial outlier detection algorithms
|
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood |
Spatial outlier neighborhood classes
|
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial.neighborhood.weighted |
Weighted Neighborhood definitions.
|
de.lmu.ifi.dbs.elki.algorithm.outlier.trivial |
Trivial outlier detection algorithms: no outliers, all outliers, label outliers.
|
de.lmu.ifi.dbs.elki.algorithm.statistics |
Statistical analysis algorithms
The algorithms in this package perform statistical analysis of the data
(e.g. compute distributions, distance distributions etc.)
|
Package | Description |
---|---|
de.lmu.ifi.dbs.elki.database |
ELKI database layer - loading, storing, indexing and accessing data
|
de.lmu.ifi.dbs.elki.database.datastore |
General data store layer API (along the lines of
Map<DBID, T> - use everywhere!) |
de.lmu.ifi.dbs.elki.database.datastore.memory |
Memory data store implementation for ELKI.
|
de.lmu.ifi.dbs.elki.database.ids |
Database object identification and ID group handling API.
|
de.lmu.ifi.dbs.elki.database.ids.generic |
Database object identification and ID group handling - generic implementations.
|
de.lmu.ifi.dbs.elki.database.ids.integer |
Integer-based DBID implementation --
do not use directly - always use
DBIDUtil . |
de.lmu.ifi.dbs.elki.database.query |
Database queries - computing distances, neighbors, similarities - API and general documentation.
|
de.lmu.ifi.dbs.elki.database.query.distance |
Prepared queries for distances.
|
de.lmu.ifi.dbs.elki.database.query.knn |
Prepared queries for k nearest neighbor (kNN) queries.
|
de.lmu.ifi.dbs.elki.database.query.range |
Prepared queries for ε-range queries.
|
de.lmu.ifi.dbs.elki.database.query.rknn |
Prepared queries for reverse k nearest neighbor (rkNN) queries.
|
de.lmu.ifi.dbs.elki.database.query.similarity |
Prepared queries for similarity functions.
|
de.lmu.ifi.dbs.elki.database.relation |
Relations, materialized and virtual (views).
|
de.lmu.ifi.dbs.elki.datasource |
Data normalization (and reconstitution) of data sets.
|
de.lmu.ifi.dbs.elki.datasource.bundle |
Object bundles - exchange container for multi-represented objects.
|
de.lmu.ifi.dbs.elki.datasource.filter |
Data filtering, in particular for normalization and projection.
|
de.lmu.ifi.dbs.elki.datasource.parser |
Parsers for different file formats and data types.
|
de.lmu.ifi.dbs.elki.index |
Index structure implementations
|
de.lmu.ifi.dbs.elki.index.preprocessed |
Index structure based on preprocessors
|
de.lmu.ifi.dbs.elki.index.preprocessed.knn |
Indexes providing KNN and rKNN data.
|
de.lmu.ifi.dbs.elki.index.preprocessed.localpca |
Index using a preprocessed local PCA.
|
de.lmu.ifi.dbs.elki.index.preprocessed.preference |
Indexes storing preference vectors.
|
de.lmu.ifi.dbs.elki.index.preprocessed.snn |
Indexes providing nearest neighbor sets
|
de.lmu.ifi.dbs.elki.index.preprocessed.subspaceproj |
Index using a preprocessed local subspaces.
|
de.lmu.ifi.dbs.elki.index.tree |
Tree-based index structures
|
de.lmu.ifi.dbs.elki.index.tree.metrical |
Tree-based index structures for metrical vector spaces.
|
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants |
M-Tree and variants.
|
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees |
Metrical index structures based on the concepts of the M-Tree
supporting processing of reverse k nearest neighbor queries by
using the k-nn distances of the entries.
|
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp | |
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop | |
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkmax | |
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mktab | |
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree | |
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.query |
Classes for performing queries (knn, range, ...) on metrical trees.
|
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.split |
Splitting strategies of nodes in an M-Tree (and variants).
|
de.lmu.ifi.dbs.elki.index.tree.query |
Classes related to generic tree queries.
|
de.lmu.ifi.dbs.elki.index.tree.spatial |
Tree-based index structures for spatial indexing.
|
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants |
R*-Tree and variants.
|
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.bulk |
Packages for bulk-loading R*-Trees.
|
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu | |
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.query |
Queries on the R-Tree family of indexes: kNN and range queries.
|
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar | |
de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.util |
Utilities for R*-Tree and variants.
|
de.lmu.ifi.dbs.elki.persistent |
Persistent data management.
|
Package | Description |
---|---|
de.lmu.ifi.dbs.elki.data |
Basic classes for different data types, database object types and label types.
|
de.lmu.ifi.dbs.elki.data.images |
Package for processing image data (e.g. compute color histograms)
|
de.lmu.ifi.dbs.elki.data.model |
Cluster models classes for various algorithms.
|
de.lmu.ifi.dbs.elki.data.spatial |
Spatial data types - interfaces and utilities.
|
de.lmu.ifi.dbs.elki.data.synthetic |
Generators for synthetic data sets
|
de.lmu.ifi.dbs.elki.data.synthetic.bymodel |
Generator using a distribution model specified in an XML configuration file.
|
de.lmu.ifi.dbs.elki.data.synthetic.bymodel.distribution |
Data generators used by the model-based generator.
|
de.lmu.ifi.dbs.elki.data.type |
Data type information, also used for type restrictions.
|
de.lmu.ifi.dbs.elki.distance | |
de.lmu.ifi.dbs.elki.distance.distancefunction |
Distance functions for use within ELKI.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.adapter |
Distance functions deriving distances from e.g. similarity measures
|
de.lmu.ifi.dbs.elki.distance.distancefunction.colorhistogram |
Distance functions using correlations.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.correlation |
Distance functions using correlations.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.external |
Distance functions using external data sources.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.geo |
Geographic (earth) distance functions.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.subspace |
Distance functions based on subspaces.
|
de.lmu.ifi.dbs.elki.distance.distancefunction.timeseries |
Distance functions designed for time series.
|
de.lmu.ifi.dbs.elki.distance.distancevalue |
Distance values, i.e. object storing an actual distance value along with
comparison functions and value parsers.
|
de.lmu.ifi.dbs.elki.distance.similarityfunction |
Similarity functions.
|
de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel |
Kernel functions.
|
Package | Description |
---|---|
de.lmu.ifi.dbs.elki.evaluation |
Functionality for the evaluation of algorithms.
|
de.lmu.ifi.dbs.elki.evaluation.histogram |
Functionality for the evaluation of algorithms using histograms.
|
de.lmu.ifi.dbs.elki.evaluation.index |
Simple index evaluation methods
|
de.lmu.ifi.dbs.elki.evaluation.outlier |
Evaluate an outlier score using a misclassification based cost model.
|
de.lmu.ifi.dbs.elki.evaluation.paircounting |
Evaluation of clustering results via pair counting.
|
de.lmu.ifi.dbs.elki.evaluation.paircounting.generator |
Pair generation for pair counting evaluation.
|
de.lmu.ifi.dbs.elki.evaluation.roc |
Evaluation of rankings using ROC AUC (Receiver Operation Characteristics - Area Under Curve)
|
de.lmu.ifi.dbs.elki.evaluation.similaritymatrix |
Render a distance matrix to visualize a clustering-distance-combination.
|
Package | Description |
---|---|
de.lmu.ifi.dbs.elki.gui |
Graphical User Interfaces for ELKI
|
de.lmu.ifi.dbs.elki.gui.configurator |
Configurator components
|
de.lmu.ifi.dbs.elki.gui.icons |
Icons for ELKI GUI.
|
de.lmu.ifi.dbs.elki.gui.minigui |
A very simple UI to build ELKI command lines.
|
de.lmu.ifi.dbs.elki.gui.multistep |
Multi-step GUI for ELKI
|
de.lmu.ifi.dbs.elki.gui.multistep.panels |
Panels for the multi-step GUI
|
de.lmu.ifi.dbs.elki.gui.util |
Utility classes for GUIs (e.g. a class to display a logging panel)
|
de.lmu.ifi.dbs.elki.visualization |
Visualization package of ELKI.
|
de.lmu.ifi.dbs.elki.visualization.batikutil |
Commonly used functionality useful for Apache Batik.
|
de.lmu.ifi.dbs.elki.visualization.colors |
Color scheme handling for ELKI.
|
de.lmu.ifi.dbs.elki.visualization.css |
Managing CSS styles / classes.
|
de.lmu.ifi.dbs.elki.visualization.gui |
Package to provide a visualization GUI.
|
de.lmu.ifi.dbs.elki.visualization.gui.detail |
Classes for managing a detail view.
|
de.lmu.ifi.dbs.elki.visualization.gui.overview |
Classes for managing the overview plot.
|
de.lmu.ifi.dbs.elki.visualization.opticsplot |
Code for drawing OPTICS plots
|
de.lmu.ifi.dbs.elki.visualization.projections |
Visualization projections
|
de.lmu.ifi.dbs.elki.visualization.projector |
Projectors are responsible for finding appropriate projections for data relations.
|
de.lmu.ifi.dbs.elki.visualization.savedialog |
Save dialog for SVG plots.
|
de.lmu.ifi.dbs.elki.visualization.scales |
Scales handling for plotting.
|
de.lmu.ifi.dbs.elki.visualization.style |
Style management for ELKI visualizations.
|
de.lmu.ifi.dbs.elki.visualization.style.lines |
Generate line styles for plotting in CSS
|
de.lmu.ifi.dbs.elki.visualization.style.marker |
Draw plot markers
|
de.lmu.ifi.dbs.elki.visualization.svg |
Base SVG functionality (generation, markers, thumbnails, export, ...).
|
de.lmu.ifi.dbs.elki.visualization.visualizers |
Visualizers for various results
|
de.lmu.ifi.dbs.elki.visualization.visualizers.events |
Events occuring in visualization contexts
|
de.lmu.ifi.dbs.elki.visualization.visualizers.optics |
Visualizers that do work on OPTICS plots
|
de.lmu.ifi.dbs.elki.visualization.visualizers.parallel |
Visualizers based on parallel coordinates.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.thumbs |
Thumbnail "Visualizers" (that take care of refreshing thumbnails)
|
de.lmu.ifi.dbs.elki.visualization.visualizers.vis1d |
Visualizers based on 1D projections.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.vis2d |
Visualizers based on 2D projections.
|
de.lmu.ifi.dbs.elki.visualization.visualizers.visunproj |
Visualizers that do not use a particular projection.
|
Package | Description |
---|---|
de.lmu.ifi.dbs.elki |
ELKI framework "Environment for Developing KDD-Applications Supported by Index-Structures"
KDDTask is the main class of the ELKI-Framework
for command-line interaction. |
de.lmu.ifi.dbs.elki.application |
Base classes for stand alone applications.
|
de.lmu.ifi.dbs.elki.application.cache |
Utility applications for the persistence layer such as distance cache builders.
|
de.lmu.ifi.dbs.elki.application.internal |
Internal utilities for development.
|
de.lmu.ifi.dbs.elki.application.jsmap |
JavaScript based map client - server architecture.
|
de.lmu.ifi.dbs.elki.application.visualization |
Visualization applications in ELKI.
|
de.lmu.ifi.dbs.elki.logging |
Logging facility for controlling logging behavior of the complete framework.
|
de.lmu.ifi.dbs.elki.logging.progress |
Progress status objects (for UI)
|
de.lmu.ifi.dbs.elki.math |
Mathematical operations and utilities used throughout the framework.
|
de.lmu.ifi.dbs.elki.math.linearalgebra |
Linear Algebra package provides classes and computational methods for operations on matrices.
|
de.lmu.ifi.dbs.elki.math.linearalgebra.fitting |
Function to numerically fit a function (such as a
Gaussian distribution
to given data. |
de.lmu.ifi.dbs.elki.math.linearalgebra.pca |
Principal Component Analysis (PCA) and Eigenvector processing.
|
de.lmu.ifi.dbs.elki.math.linearalgebra.pca.weightfunctions |
Weight functions used in weighted PCA via
WeightedCovarianceMatrixBuilder |
de.lmu.ifi.dbs.elki.math.spacefillingcurves |
Space filling curves.
|
de.lmu.ifi.dbs.elki.math.statistics |
Statistical tests and methods.
|
de.lmu.ifi.dbs.elki.properties |
Property handling and main ELKI properties file.
|
de.lmu.ifi.dbs.elki.result |
Result types, representation and handling
|
de.lmu.ifi.dbs.elki.result.optics |
Result classes for OPTICS.
|
de.lmu.ifi.dbs.elki.result.outlier |
Outlier result classes
|
de.lmu.ifi.dbs.elki.result.textwriter |
Text serialization (CSV, Gnuplot, Console, ...)
|
de.lmu.ifi.dbs.elki.result.textwriter.naming |
Naming schemes for clusters (for output when an algorithm doesn't generate cluster names).
|
de.lmu.ifi.dbs.elki.result.textwriter.writers |
Serialization handlers for individual data types.
|
de.lmu.ifi.dbs.elki.utilities |
Utility and helper classes - commonly used data structures, output formatting, exceptions, ...
|
de.lmu.ifi.dbs.elki.utilities.datastructures |
Basic memory structures such as heaps and object hierarchies.
|
de.lmu.ifi.dbs.elki.utilities.datastructures.heap |
Heap structures and variations such as bounded priority heaps.
|
de.lmu.ifi.dbs.elki.utilities.datastructures.hierarchy |
Delegate implementation of a hierarchy.
|
de.lmu.ifi.dbs.elki.utilities.designpattern |
Interfaces and implementations related to common "design patterns".
|
de.lmu.ifi.dbs.elki.utilities.documentation |
Documentation utilities: Annotations for Title, Description, Reference
|
de.lmu.ifi.dbs.elki.utilities.exceptions |
Exception classes and common exception messages.
|
de.lmu.ifi.dbs.elki.utilities.iterator |
Various
Iterator decorators and adapters. |
de.lmu.ifi.dbs.elki.utilities.optionhandling |
Parameter handling and option descriptions.
|
de.lmu.ifi.dbs.elki.utilities.optionhandling.constraints |
Constraints allow to restrict possible values for parameters.
|
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameterization |
Configuration managers
See the
de.lmu.ifi.dbs.elki.utilities.optionhandling package for documentation! |
de.lmu.ifi.dbs.elki.utilities.optionhandling.parameters |
Classes for various typed parameters.
|
de.lmu.ifi.dbs.elki.utilities.pairs |
Pairs and triples utility classes.
|
de.lmu.ifi.dbs.elki.utilities.referencepoints |
Package containing strategies to obtain reference points
Shared code for various algorithms that use reference points.
|
de.lmu.ifi.dbs.elki.utilities.scaling |
Scaling functions: linear, logarithmic, gamma, clipping, ...
|
de.lmu.ifi.dbs.elki.utilities.scaling.outlier |
Scaling of Outlier scores, that require a statistical analysis of the occurring values
|
de.lmu.ifi.dbs.elki.utilities.xml |
XML and XHTML utilities.
|
de.lmu.ifi.dbs.elki.workflow |
Work flow packages, e.g. following the usual KDD model, closely related to CRISP-DM
|