Uses of Class
de.lmu.ifi.dbs.elki.distance.distancevalue.NumberDistance

Packages that use NumberDistance

Package	Description
de.lmu.ifi.dbs.elki.algorithm	Algorithms suitable as a task for the KDDTask main routine.
de.lmu.ifi.dbs.elki.algorithm.clustering	Clustering algorithms Clustering algorithms are supposed to implement the Algorithm-Interface.
de.lmu.ifi.dbs.elki.algorithm.outlier	Outlier detection algorithms
de.lmu.ifi.dbs.elki.algorithm.outlier.spatial	Spatial outlier detection algorithms
de.lmu.ifi.dbs.elki.algorithm.statistics	Statistical analysis algorithms The algorithms in this package perform statistical analysis of the data (e.g. compute distributions, distance distributions etc.)
de.lmu.ifi.dbs.elki.application.cache	Utility applications for the persistence layer such as distance cache builders.
de.lmu.ifi.dbs.elki.application.visualization	Visualization applications in ELKI.
de.lmu.ifi.dbs.elki.datasource.parser	Parsers for different file formats and data types.
de.lmu.ifi.dbs.elki.distance.distancefunction.adapter	Distance functions deriving distances from e.g. similarity measures
de.lmu.ifi.dbs.elki.distance.distancevalue	Distance values, i.e. object storing an actual distance value along with comparison functions and value parsers.
de.lmu.ifi.dbs.elki.evaluation.similaritymatrix	Render a distance matrix to visualize a clustering-distance-combination.
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp	MkAppTree
de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop	MkCoPTree
de.lmu.ifi.dbs.elki.math.linearalgebra.pca	Principal Component Analysis (PCA) and Eigenvector processing.
de.lmu.ifi.dbs.elki.visualization.opticsplot	Code for drawing OPTICS plots
de.lmu.ifi.dbs.elki.visualization.svg	Base SVG functionality (generation, markers, thumbnails, export, ...).
de.lmu.ifi.dbs.elki.visualization.visualizers.vis2d	Visualizers based on 2D projections.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.algorithm

Classes in de.lmu.ifi.dbs.elki.algorithm with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	MaterializeDistances<O,D extends NumberDistance<D,?>> Algorithm to materialize all the distances in a data set.
static class	MaterializeDistances.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.algorithm.clustering

Classes in de.lmu.ifi.dbs.elki.algorithm.clustering with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	OPTICSXi<N extends NumberDistance<N,?>> Class to handle OPTICS Xi extraction.
static class	OPTICSXi.Parameterizer<D extends NumberDistance<D,?>> Parameterization class.
private static class	OPTICSXi.SteepScanPosition<N extends NumberDistance<N,?>> Position when scanning for steep areas

Uses of NumberDistance in de.lmu.ifi.dbs.elki.algorithm.outlier

Classes in de.lmu.ifi.dbs.elki.algorithm.outlier with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	INFLO<O,D extends NumberDistance<D,?>> INFLO provides the Mining Algorithms (Two-way Search Method) for Influence Outliers using Symmetric Relationship Reference: Jin, W., Tung, A., Han, J., and Wang, W. 2006 Ranking outliers using symmetric neighborhood relationship In Proc.
static class	INFLO.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	KNNOutlier<O,D extends NumberDistance<D,?>> Outlier Detection based on the distance of an object to its k nearest neighbor.
static class	KNNOutlier.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	KNNWeightOutlier<O,D extends NumberDistance<D,?>> Outlier Detection based on the accumulated distances of a point to its k nearest neighbors.
static class	KNNWeightOutlier.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	LDOF<O,D extends NumberDistance<D,?>> Computes the LDOF (Local Distance-Based Outlier Factor) for all objects of a Database.
static class	LDOF.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	LOCI<O,D extends NumberDistance<D,?>> Fast Outlier Detection Using the "Local Correlation Integral".
static class	LOCI.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	LOF<O,D extends NumberDistance<D,?>> Algorithm to compute density-based local outlier factors in a database based on a specified parameter LOF.K_ID (-lof.k).
static class	LOF.LOFResult<O,D extends NumberDistance<D,?>> Encapsulates information like the neighborhood, the LRD and LOF values of the objects during a run of the LOF algorithm.
static class	LOF.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	LoOP<O,D extends NumberDistance<D,?>> LoOP: Local Outlier Probabilities Distance/density based algorithm similar to LOF to detect outliers, but with statistical methods to achieve better result stability.
static class	LoOP.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	OnlineLOF<O,D extends NumberDistance<D,?>> Incremental version of the LOF Algorithm, supports insertions and removals.
static class	OnlineLOF.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	OPTICSOF<O,D extends NumberDistance<D,?>> OPTICSOF provides the Optics-of algorithm, an algorithm to find Local Outliers in a database.
static class	OPTICSOF.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	ReferenceBasedOutlierDetection<V extends NumberVector<?,?>,D extends NumberDistance<D,?>> provides the Reference-Based Outlier Detection algorithm, an algorithm that computes kNN distances approximately, using reference points.
static class	ReferenceBasedOutlierDetection.Parameterizer<V extends NumberVector<?,?>,D extends NumberDistance<D,?>> Parameterization class.

Fields in de.lmu.ifi.dbs.elki.algorithm.outlier declared as NumberDistance

Modifier and Type	Field and Description
private D	LOCI.rmax Holds the value of LOCI.RMAX_ID.
protected D	LOCI.Parameterizer.rmax

Uses of NumberDistance in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial

Classes in de.lmu.ifi.dbs.elki.algorithm.outlier.spatial with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	AbstractDistanceBasedSpatialOutlier<N,O,D extends NumberDistance<D,?>> Abstract base class for distance-based spatial outlier detection methods.
static class	AbstractDistanceBasedSpatialOutlier.Parameterizer<N,O,D extends NumberDistance<D,?>> Parameterization class.
class	CTLuGLSBackwardSearchAlgorithm<V extends NumberVector<?,?>,D extends NumberDistance<D,?>> GLS-Backward Search is a statistical approach to detecting spatial outliers.
static class	CTLuGLSBackwardSearchAlgorithm.Parameterizer<V extends NumberVector<?,?>,D extends NumberDistance<D,?>> Parameterization class
class	CTLuRandomWalkEC<N,D extends NumberDistance<D,?>> Spatial outlier detection based on random walks.
static class	CTLuRandomWalkEC.Parameterizer<N,D extends NumberDistance<D,?>> Parameterization class.
class	SLOM<N,O,D extends NumberDistance<D,?>> SLOM: a new measure for local spatial outliers Reference: Sanjay Chawla and Pei Sun SLOM: a new measure for local spatial outliers in Knowledge and Information Systems 2005 This implementation works around some corner cases in SLOM, in particular when an object has none or a single neighbor only (albeit the results will still not be too useful then), which will result in divisions by zero.
static class	SLOM.Parameterizer<N,O,D extends NumberDistance<D,?>> Parameterization class.
class	SOF<N,O,D extends NumberDistance<D,?>> The Spatial Outlier Factor (SOF) is a spatial LOF variation.
static class	SOF.Parameterizer<N,O,D extends NumberDistance<D,?>> Parameterization class

Uses of NumberDistance in de.lmu.ifi.dbs.elki.algorithm.statistics

Classes in de.lmu.ifi.dbs.elki.algorithm.statistics with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	DistanceStatisticsWithClasses<O,D extends NumberDistance<D,?>> Algorithm to gather statistics over the distance distribution in the data set.
static class	DistanceStatisticsWithClasses.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	EvaluateRankingQuality<V extends NumberVector<V,?>,D extends NumberDistance<D,?>> Evaluate a distance function with respect to kNN queries.
static class	EvaluateRankingQuality.Parameterizer<V extends NumberVector<V,?>,D extends NumberDistance<D,?>> Parameterization class.
class	RankingQualityHistogram<O,D extends NumberDistance<D,?>> Evaluate a distance function with respect to kNN queries.
static class	RankingQualityHistogram.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.application.cache

Classes in de.lmu.ifi.dbs.elki.application.cache with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	CacheDoubleDistanceInOnDiskMatrix<O,D extends NumberDistance<D,?>> Wrapper to convert a traditional text-serialized result into a on-disk matrix for random access.
static class	CacheDoubleDistanceInOnDiskMatrix.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	CacheFloatDistanceInOnDiskMatrix<O,D extends NumberDistance<D,?>> Wrapper to convert a traditional text-serialized result into a on-disk matrix for random access.
static class	CacheFloatDistanceInOnDiskMatrix.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.application.visualization

Classes in de.lmu.ifi.dbs.elki.application.visualization with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	KNNExplorer<O extends NumberVector<?,?>,D extends NumberDistance<D,?>> User application to explore the k Nearest Neighbors for a given data set and distance function.
static class	KNNExplorer.Parameterizer<O extends NumberVector<?,?>,D extends NumberDistance<D,?>> Parameterization class.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.datasource.parser

Classes in de.lmu.ifi.dbs.elki.datasource.parser with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	NumberDistanceParser<D extends NumberDistance<D,N>,N extends Number> Provides a parser for parsing one distance value per line.
static class	NumberDistanceParser.Parameterizer<D extends NumberDistance<D,N>,N extends Number> Parameterization class.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.distance.distancefunction.adapter

Fields in de.lmu.ifi.dbs.elki.distance.distancefunction.adapter with type parameters of type NumberDistance

Modifier and Type	Field and Description
protected NormalizedSimilarityFunction<? super O,? extends NumberDistance<?,?>>	AbstractSimilarityAdapter.similarityFunction Holds the similarity function.
protected NormalizedSimilarityFunction<? super O,? extends NumberDistance<?,?>>	AbstractSimilarityAdapter.Parameterizer.similarityFunction Holds the similarity function.
private SimilarityQuery<? super O,? extends NumberDistance<?,?>>	AbstractSimilarityAdapter.Instance.similarityQuery The similarity query we use.

Constructor parameters in de.lmu.ifi.dbs.elki.distance.distancefunction.adapter with type arguments of type NumberDistance

Constructor and Description
AbstractSimilarityAdapter.Instance(Relation<O> database, DistanceFunction<? super O,DoubleDistance> parent, SimilarityQuery<? super O,? extends NumberDistance<?,?>> similarityQuery) Constructor.
AbstractSimilarityAdapter(NormalizedSimilarityFunction<? super O,? extends NumberDistance<?,?>> similarityFunction) Constructor.
SimilarityAdapterArccos.Instance(Relation<O> database, DistanceFunction<? super O,DoubleDistance> parent, SimilarityQuery<O,? extends NumberDistance<?,?>> similarityQuery) Constructor.
SimilarityAdapterArccos(NormalizedSimilarityFunction<? super O,? extends NumberDistance<?,?>> similarityFunction) Constructor.
SimilarityAdapterLinear.Instance(Relation<O> database, DistanceFunction<? super O,DoubleDistance> parent, SimilarityQuery<? super O,? extends NumberDistance<?,?>> similarityQuery) Constructor.
SimilarityAdapterLinear(NormalizedSimilarityFunction<? super O,? extends NumberDistance<?,?>> similarityFunction) Constructor.
SimilarityAdapterLn.Instance(Relation<O> database, DistanceFunction<? super O,DoubleDistance> parent, SimilarityQuery<O,? extends NumberDistance<?,?>> similarityQuery) Constructor.
SimilarityAdapterLn(NormalizedSimilarityFunction<? super O,? extends NumberDistance<?,?>> similarityFunction) Constructor.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.distance.distancevalue

Classes in de.lmu.ifi.dbs.elki.distance.distancevalue with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	NumberDistance<D extends NumberDistance<D,N>,N extends Number> Provides a Distance for a number-valued distance.

Subclasses of NumberDistance in de.lmu.ifi.dbs.elki.distance.distancevalue

Modifier and Type	Class and Description
class	BitDistance Provides a Distance for a bit-valued distance.
class	DoubleDistance Provides a Distance for a double-valued distance.
class	FloatDistance Provides a Distance for a float-valued distance.
class	IntegerDistance Provides an integer distance value.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.evaluation.similaritymatrix

Fields in de.lmu.ifi.dbs.elki.evaluation.similaritymatrix with type parameters of type NumberDistance

Modifier and Type	Field and Description
private DistanceFunction<? super O,? extends NumberDistance<?,?>>	ComputeSimilarityMatrixImage.distanceFunction The distance function to use
private DistanceFunction<O,? extends NumberDistance<?,?>>	ComputeSimilarityMatrixImage.Parameterizer.distanceFunction The distance function to use

Constructor parameters in de.lmu.ifi.dbs.elki.evaluation.similaritymatrix with type arguments of type NumberDistance

Constructor and Description
ComputeSimilarityMatrixImage(DistanceFunction<? super O,? extends NumberDistance<?,?>> distanceFunction, ScalingFunction scaling, boolean skipzero) Constructor.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp

Classes in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp with type parameters of type NumberDistance

Modifier and Type	Class and Description
(package private) class	MkAppDirectoryEntry<D extends NumberDistance<D,?>> Represents an entry in a directory node of a MkApp-Tree.
(package private) interface	MkAppEntry<D extends NumberDistance<D,?>> Defines the requirements for an entry in an MkCop-Tree node.
(package private) class	MkAppLeafEntry<D extends NumberDistance<D,?>> Represents an entry in a leaf node of a MkApp-Tree.
class	MkAppTree<O,D extends NumberDistance<D,?>> MkAppTree is a metrical index structure based on the concepts of the M-Tree supporting efficient processing of reverse k nearest neighbor queries for parameter k < kmax.
class	MkAppTreeFactory<O,D extends NumberDistance<D,?>> Factory for a MkApp-Tree
static class	MkAppTreeFactory.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	MkAppTreeIndex<O,D extends NumberDistance<D,?>> MkAppTree used as database index.
(package private) class	MkAppTreeNode<O,D extends NumberDistance<D,?>> Represents a node in an MkApp-Tree.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop

Classes in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop with type parameters of type NumberDistance

Modifier and Type	Class and Description
(package private) class	MkCoPDirectoryEntry<D extends NumberDistance<D,?>> Represents an entry in a directory node of an MkCop-Tree.
(package private) interface	MkCoPEntry<D extends NumberDistance<D,?>> Defines the requirements for an entry in an MkCop-Tree node.
(package private) class	MkCoPLeafEntry<D extends NumberDistance<D,?>> Represents an entry in a leaf node of a MkCoP-Tree.
class	MkCoPTree<O,D extends NumberDistance<D,?>> MkCopTree is a metrical index structure based on the concepts of the M-Tree supporting efficient processing of reverse k nearest neighbor queries for parameter k < kmax.
class	MkCopTreeFactory<O,D extends NumberDistance<D,?>> Factory for a MkCoPTree-Tree
static class	MkCopTreeFactory.Parameterizer<O,D extends NumberDistance<D,?>> Parameterization class.
class	MkCoPTreeIndex<O,D extends NumberDistance<D,?>> MkCoPTree used as database index.
(package private) class	MkCoPTreeNode<O,D extends NumberDistance<D,?>> Represents a node in an MkCop-Tree.

Methods in de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop with type parameters of type NumberDistance

Modifier and Type	Method and Description
<O,D extends NumberDistance<D,?>> D	ApproximationLine.getApproximatedKnnDistance(int k, DistanceQuery<O,D> distanceFunction) Returns the approximated knn-distance at the specified k.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.math.linearalgebra.pca

Methods in de.lmu.ifi.dbs.elki.math.linearalgebra.pca with type parameters of type NumberDistance

Modifier and Type	Method and Description
<D extends NumberDistance<?,?>> PCAResult	PCARunner.processQueryResult(Collection<DistanceResultPair<D>> results, Relation<? extends V> database) Run PCA on a QueryResult Collection
<D extends NumberDistance<?,?>> PCAFilteredResult	PCAFilteredRunner.processQueryResult(Collection<DistanceResultPair<D>> results, Relation<? extends V> database) Run PCA on a QueryResult Collection
<D extends NumberDistance<?,?>> Matrix	AbstractCovarianceMatrixBuilder.processQueryResults(Collection<DistanceResultPair<D>> results, Relation<? extends V> database)
<D extends NumberDistance<?,?>> Matrix	CovarianceMatrixBuilder.processQueryResults(Collection<DistanceResultPair<D>> results, Relation<? extends V> database) Compute Covariance Matrix for a QueryResult Collection By default it will just collect the ids and run processIds
<D extends NumberDistance<?,?>> Matrix	WeightedCovarianceMatrixBuilder.processQueryResults(Collection<DistanceResultPair<D>> results, Relation<? extends V> database, int k) Compute Covariance Matrix for a QueryResult Collection By default it will just collect the ids and run processIds
<D extends NumberDistance<?,?>> Matrix	AbstractCovarianceMatrixBuilder.processQueryResults(Collection<DistanceResultPair<D>> results, Relation<? extends V> database, int k)
<D extends NumberDistance<?,?>> Matrix	CovarianceMatrixBuilder.processQueryResults(Collection<DistanceResultPair<D>> results, Relation<? extends V> database, int k) Compute Covariance Matrix for a QueryResult Collection By default it will just collect the ids and run processIds

Uses of NumberDistance in de.lmu.ifi.dbs.elki.visualization.opticsplot

Classes in de.lmu.ifi.dbs.elki.visualization.opticsplot with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	OPTICSNumberDistance<D extends NumberDistance<D,?>> Adapter that will map a regular number distance to its double value.

Uses of NumberDistance in de.lmu.ifi.dbs.elki.visualization.svg

Methods in de.lmu.ifi.dbs.elki.visualization.svg with type parameters of type NumberDistance

Modifier and Type	Method and Description
static <V extends NumberVector<V,?>,D extends NumberDistance<?,?>> Element	SVGHyperSphere.drawCross(SVGPlot svgp, Projection2D proj, V mid, D rad) Wireframe "cross" hypersphere
static <V extends NumberVector<V,?>,D extends NumberDistance<?,?>> Element	SVGHyperSphere.drawEuclidean(SVGPlot svgp, Projection2D proj, V mid, D rad) Wireframe "euclidean" hypersphere
static <V extends NumberVector<V,?>,D extends NumberDistance<?,?>> Element	SVGHyperSphere.drawLp(SVGPlot svgp, Projection2D proj, V mid, D rad, double p) Wireframe "Lp" hypersphere
static <V extends NumberVector<V,?>,D extends NumberDistance<?,?>> Element	SVGHyperSphere.drawManhattan(SVGPlot svgp, Projection2D proj, V mid, D rad) Wireframe "manhattan" hypersphere

Uses of NumberDistance in de.lmu.ifi.dbs.elki.visualization.visualizers.vis2d

Classes in de.lmu.ifi.dbs.elki.visualization.visualizers.vis2d with type parameters of type NumberDistance

Modifier and Type	Class and Description
class	TreeSphereVisualization<NV extends NumberVector<NV,?>,D extends NumberDistance<D,?>,N extends AbstractMTreeNode<NV,D,N,E>,E extends MTreeEntry<D>> Visualize the bounding sphere of a metric index.