de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans

Class KMeansMacQueen<V extends NumberVector>

java.lang.Object

de.lmu.ifi.dbs.elki.algorithm.AbstractAlgorithm<R>

de.lmu.ifi.dbs.elki.algorithm.AbstractNumberVectorDistanceBasedAlgorithm<V,Clustering<M>>

de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.AbstractKMeans<V,KMeansModel>

de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.KMeansMacQueen<V>

Type Parameters:

V - vector type to use

All Implemented Interfaces:

Algorithm, ClusteringAlgorithm<Clustering<KMeansModel>>, KMeans<V,KMeansModel>, DistanceBasedAlgorithm<V>

@Title(value="K-Means")
 @Description(value="Finds a least-squares partitioning into k clusters.")
 @Reference(authors="J. MacQueen",
           title="Some Methods for Classification and Analysis of Multivariate Observations",
           booktitle="5th Berkeley Symp. Math. Statist. Prob., Vol. 1, 1967, pp 281-297",
           url="http://projecteuclid.org/euclid.bsmsp/1200512992")
public class KMeansMacQueen<V extends NumberVector>
extends AbstractKMeans<V,KMeansModel>

The original k-means algorithm, using MacQueen style incremental updates; making this effectively an "online" (streaming) algorithm. This implementation will by default iterate over the data set until convergence, although MacQueen likely only meant to do a single pass over the data.

Reference:
J. MacQueen: Some Methods for Classification and Analysis of Multivariate Observations.
In 5th Berkeley Symp. Math. Statist. Prob., Vol. 1, 1967, pp 281-297.

Author:

Erich Schubert

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
static class	KMeansMacQueen.Parameterizer<V extends NumberVector> Parameterization class.

Field Summary

Fields

Modifier and Type	Field and Description
private static String	KEY Key for statistics logging.
private static Logging	LOG The logger for this class.

Fields inherited from class de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.AbstractKMeans

initializer, k, maxiter

Fields inherited from class de.lmu.ifi.dbs.elki.algorithm.AbstractNumberVectorDistanceBasedAlgorithm

distanceFunction

Fields inherited from interface de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.KMeans

INIT_ID, K_ID, MAXITER_ID, SEED_ID

Fields inherited from interface de.lmu.ifi.dbs.elki.algorithm.DistanceBasedAlgorithm

DISTANCE_FUNCTION_ID

Constructor Summary

Constructors

Constructor and Description
KMeansMacQueen(NumberVectorDistanceFunction<? super V> distanceFunction, int k, int maxiter, KMeansInitialization<? super V> initializer) Constructor.

Method Summary

Modifier and Type	Method and Description
protected Logging	getLogger() Get the (STATIC) logger for this class.
Clustering<KMeansModel>	run(Database database, Relation<V> relation) Run the clustering algorithm.

Methods inherited from class de.lmu.ifi.dbs.elki.algorithm.clustering.kmeans.AbstractKMeans

assignToNearestCluster, getInputTypeRestriction, incrementalUpdateMean, logVarstat, macQueenIterate, means, medians, setDistanceFunction, setK, updateAssignment

Methods inherited from class de.lmu.ifi.dbs.elki.algorithm.AbstractNumberVectorDistanceBasedAlgorithm

getDistanceFunction

Methods inherited from class de.lmu.ifi.dbs.elki.algorithm.AbstractAlgorithm

makeParameterDistanceFunction, run

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface de.lmu.ifi.dbs.elki.algorithm.clustering.ClusteringAlgorithm

run

Methods inherited from interface de.lmu.ifi.dbs.elki.algorithm.DistanceBasedAlgorithm

getDistanceFunction

Field Detail

LOG

private static final Logging LOG

The logger for this class.

KEY

private static final String KEY

Key for statistics logging.

Constructor Detail

KMeansMacQueen

public KMeansMacQueen(NumberVectorDistanceFunction<? super V> distanceFunction,
                      int k,
                      int maxiter,
                      KMeansInitialization<? super V> initializer)

Constructor.

Parameters:

distanceFunction - distance function

k - k parameter

maxiter - Maxiter parameter

initializer - Initialization method

Method Detail

run

public Clustering<KMeansModel> run(Database database,
                                   Relation<V> relation)

Description copied from interface: KMeans

Run the clustering algorithm.

Parameters:

database - Database to run on.

relation - Relation to process.

Returns:

Clustering result

getLogger

protected Logging getLogger()

Description copied from class: AbstractAlgorithm

Get the (STATIC) logger for this class.

Specified by:

getLogger in class AbstractAlgorithm<Clustering<KMeansModel>>

Returns:

the static logger