Uses of Interface
de.lmu.ifi.dbs.elki.database.ids.DBIDArrayIter

Packages that use DBIDArrayIter

Package	Description
de.lmu.ifi.dbs.elki.algorithm.clustering.biclustering	Biclustering algorithms.
de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical	Hierarchical agglomerative clustering (HAC).
de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical.extraction	Extraction of partitional clusterings from hierarchical results.
de.lmu.ifi.dbs.elki.algorithm.clustering.optics	OPTICS family of clustering algorithms.
de.lmu.ifi.dbs.elki.database.ids	Database object identification and ID group handling API.
de.lmu.ifi.dbs.elki.database.ids.generic	Database object identification and ID group handling - generic implementations.
de.lmu.ifi.dbs.elki.database.ids.integer	Integer-based DBID implementation -- do not use directly - always use DBIDUtil.
de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel	Kernel functions.
de.lmu.ifi.dbs.elki.index.tree.spatial.kd	K-d-tree and variants.
de.lmu.ifi.dbs.elki.math.dimensionsimilarity	Functions to compute the similarity of dimensions (or the interestingness of the combination).
de.lmu.ifi.dbs.elki.utilities.datastructures	Basic memory structures such as heaps and object hierarchies.

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.algorithm.clustering.biclustering

Fields in de.lmu.ifi.dbs.elki.algorithm.clustering.biclustering declared as DBIDArrayIter

Modifier and Type	Field and Description
private DBIDArrayIter	AbstractBiclustering.iter Iterator to use for more efficient random access.

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical

Fields in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical declared as DBIDArrayIter

Modifier and Type	Field and Description
private DBIDArrayIter	AbstractHDBSCAN.HDBSCANAdapter.p Iterators for accessing the data objects.
private DBIDArrayIter	AbstractHDBSCAN.HDBSCANAdapter.q Iterators for accessing the data objects.

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical with parameters of type DBIDArrayIter

Modifier and Type	Method and Description
private void	CLINK.clinkstep3(DBIDRef id, DBIDArrayIter i, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) Third step: Determine the values for P and L
private void	CLINK.clinkstep4567(DBIDRef id, ArrayDBIDs ids, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) Fourth to seventh step of CLINK: find best insertion
private void	CLINK.clinkstep8(DBIDRef id, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) Update hierarchy.
protected int	AnderbergHierarchicalClustering.findMerge(int size, double[] scratch, DBIDArrayIter ix, DBIDArrayIter iy, double[] bestd, int[] besti, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableIntegerDataStore csize) Perform the next merge step.
protected int	AGNES.findMerge(int size, double[] scratch, DBIDArrayIter ix, DBIDArrayIter iy, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableIntegerDataStore csize) Perform the next merge step in AGNES.
protected static <O> void	AGNES.initializeDistanceMatrix(double[] scratch, DistanceQuery<O> dq, DBIDArrayIter ix, DBIDArrayIter iy, boolean square) Initialize a distance matrix.
protected void	AnderbergHierarchicalClustering.merge(int size, double[] scratch, DBIDArrayIter ix, DBIDArrayIter iy, double[] bestd, int[] besti, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableIntegerDataStore csize, double mindist, int x, int y) Execute the cluster merge.
protected void	AGNES.merge(int size, double[] scratch, DBIDArrayIter ix, DBIDArrayIter iy, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableIntegerDataStore csize, double mindist, int x, int y) Execute the cluster merge.
protected void	SLINK.process(DBIDRef id, ArrayDBIDs ids, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) SLINK main loop.
protected void	CLINK.process(DBIDRef id, ArrayDBIDs ids, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) CLINK main loop, based on the SLINK main loop.
private void	SLINK.slinkstep3(DBIDRef id, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda, WritableDoubleDataStore m) Third step: Determine the values for P and L
private void	SLINK.slinkstep4(DBIDRef id, DBIDArrayIter it, int n, WritableDBIDDataStore pi, WritableDoubleDataStore lambda) Fourth step: Actualize the clusters if necessary
private void	SLINK.step2(DBIDRef id, DBIDArrayIter it, int n, DistanceQuery<? super O> distQuery, WritableDoubleDataStore m) Second step: Determine the pairwise distances from all objects in the pointer representation to the new object with the specified id.
private void	SLINK.step2primitive(DBIDRef id, DBIDArrayIter it, int n, Relation<? extends O> relation, PrimitiveDistanceFunction<? super O> distFunc, WritableDoubleDataStore m) Second step: Determine the pairwise distances from all objects in the pointer representation to the new object with the specified id.
protected void	AnderbergHierarchicalClustering.updateMatrix(int size, double[] scratch, DBIDArrayIter ij, double[] bestd, int[] besti, WritableDoubleDataStore lambda, WritableIntegerDataStore csize, double mindist, int x, int y, int sizex, int sizey) Update the scratch distance matrix.
protected void	AGNES.updateMatrix(int size, double[] scratch, DBIDArrayIter ij, WritableDoubleDataStore lambda, WritableIntegerDataStore csize, double mindist, int x, int y, int sizex, int sizey) Update the scratch distance matrix.

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical.extraction

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.hierarchical.extraction with parameters of type DBIDArrayIter

Modifier and Type	Method and Description
private int	ExtractFlatClusteringFromHierarchy.findSplit(ArrayDBIDs order, DBIDArrayIter it, DoubleDataStore lambda) Find the splitting point in the ordered DBIDs list.

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.algorithm.clustering.optics

Fields in de.lmu.ifi.dbs.elki.algorithm.clustering.optics declared as DBIDArrayIter

Modifier and Type	Field and Description
private DBIDArrayIter	OPTICSXi.SteepScanPosition.cur Variable for accessing.
private DBIDArrayIter	OPTICSXi.SteepScanPosition.next Variable for accessing.

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.optics that return DBIDArrayIter

Modifier and Type	Method and Description
DBIDArrayIter	ClusterOrder.iter() Get an iterator.

Methods in de.lmu.ifi.dbs.elki.algorithm.clustering.optics with parameters of type DBIDArrayIter

Modifier and Type	Method and Description
int	OPTICSList.Instance.findMin(DBIDArrayIter it) Find the minimum in the candidates array.

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.database.ids

Subinterfaces of DBIDArrayIter in de.lmu.ifi.dbs.elki.database.ids

Modifier and Type	Interface and Description
interface	DBIDArrayMIter Modifiable array iterator.
interface	DoubleDBIDListIter Iterator over double-DBID pairs results.
interface	DoubleDBIDListMIter Modifiable DBIDList iterator.

Classes in de.lmu.ifi.dbs.elki.database.ids that implement DBIDArrayIter

Modifier and Type	Class and Description
protected static class	EmptyDBIDs.EmptyDBIDIterator Iterator for empty DBIDs-

Methods in de.lmu.ifi.dbs.elki.database.ids that return DBIDArrayIter

Modifier and Type	Method and Description
DBIDArrayIter	DBIDArrayIter.advance()
DBIDArrayIter	DBIDArrayIter.advance(int count)
DBIDArrayIter	ArrayDBIDs.iter() Iterable
DBIDArrayIter	DBIDArrayIter.retract()
DBIDArrayIter	DBIDArrayIter.seek(int off)

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.database.ids.generic

Classes in de.lmu.ifi.dbs.elki.database.ids.generic that implement DBIDArrayIter

Modifier and Type	Class and Description
private class	KNNSubList.Itr Iterator for the sublist.
(package private) class	UnmodifiableArrayDBIDs.UnmodifiableDBIDArrayIter Make an existing DBIDMIter unmodifiable.

Fields in de.lmu.ifi.dbs.elki.database.ids.generic declared as DBIDArrayIter

Modifier and Type	Field and Description
private DBIDArrayIter	UnmodifiableArrayDBIDs.UnmodifiableDBIDArrayIter.it Wrapped iterator.
private DBIDArrayIter	MaskedDBIDs.DBIDItr.iter Array iterator, for referencing.
private DBIDArrayIter	MaskedDBIDs.InvDBIDItr.iter Array iterator, for referencing.

Methods in de.lmu.ifi.dbs.elki.database.ids.generic that return DBIDArrayIter

Modifier and Type	Method and Description
DBIDArrayIter	UnmodifiableArrayDBIDs.UnmodifiableDBIDArrayIter.advance()
DBIDArrayIter	UnmodifiableArrayDBIDs.UnmodifiableDBIDArrayIter.advance(int count)
DBIDArrayIter	UnmodifiableArrayDBIDs.iter()
DBIDArrayIter	UnmodifiableArrayDBIDs.UnmodifiableDBIDArrayIter.retract()
DBIDArrayIter	UnmodifiableArrayDBIDs.UnmodifiableDBIDArrayIter.seek(int off)

Constructors in de.lmu.ifi.dbs.elki.database.ids.generic with parameters of type DBIDArrayIter

Constructor and Description
UnmodifiableDBIDArrayIter(DBIDArrayIter it) Constructor.

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.database.ids.integer

Subinterfaces of DBIDArrayIter in de.lmu.ifi.dbs.elki.database.ids.integer

Modifier and Type	Interface and Description
interface	DoubleIntegerDBIDListIter Combination interface of the DoubleDBIDListIter with IntegerDBIDIter.
(package private) interface	DoubleIntegerDBIDListMIter Combination interface for modifiable iterators.
(package private) interface	IntegerDBIDArrayIter Modifiable integer array iterator.
(package private) interface	IntegerDBIDArrayMIter Modifiable integer array iterator.

Classes in de.lmu.ifi.dbs.elki.database.ids.integer that implement DBIDArrayIter

Modifier and Type	Class and Description
private class	ArrayModifiableIntegerDBIDs.Itr Iterator class.
private class	ArrayModifiableIntegerDBIDs.Slice.SliceItr Iterator class.
protected class	ArrayStaticIntegerDBIDs.Itr DBID iterator in ELKI/C style.
private class	ArrayStaticIntegerDBIDs.Slice.SliceItr Iterator class.
private class	DoubleIntegerDBIDList.Itr List iterator.
private class	DoubleIntegerDBIDPairKNNListHeap.Itr Iterator.
private class	DoubleIntegerDBIDPairList.Itr List iterator.
protected class	IntegerDBID.Itr Pseudo iterator for DBIDs interface.
private class	IntegerDBIDKNNSubList.Itr Iterator for the sublist.
private static class	IntegerDBIDRange.Itr Iterator in ELKI/C++ style.
protected class	IntegerDBIDVar.Itr Pseudo iterator for DBIDs interface.
(package private) class	UnmodifiableIntegerArrayDBIDs.UnmodifiableDBIDIter Make an existing DBIDMIter unmodifiable.

Methods in de.lmu.ifi.dbs.elki.database.ids.integer that return DBIDArrayIter

Modifier and Type	Method and Description
DBIDArrayIter	UnmodifiableIntegerArrayDBIDs.UnmodifiableDBIDIter.advance()
DBIDArrayIter	UnmodifiableIntegerArrayDBIDs.UnmodifiableDBIDIter.advance(int count)
DBIDArrayIter	UnmodifiableIntegerArrayDBIDs.UnmodifiableDBIDIter.retract()
DBIDArrayIter	UnmodifiableIntegerArrayDBIDs.UnmodifiableDBIDIter.seek(int off)

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel

Methods in de.lmu.ifi.dbs.elki.distance.similarityfunction.kernel that return DBIDArrayIter

Modifier and Type	Method and Description
DBIDArrayIter	KernelMatrix.DBIDMap.iter() Get an array iterator, for scanning.
DBIDArrayIter	KernelMatrix.RangeMap.iter()
DBIDArrayIter	KernelMatrix.SortedArrayMap.iter()

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.index.tree.spatial.kd

Methods in de.lmu.ifi.dbs.elki.index.tree.spatial.kd with parameters of type DBIDArrayIter

Modifier and Type	Method and Description
private double	MinimalisticMemoryKDTree.KDTreeKNNQuery.kdKNNSearch(int left, int right, int axis, O query, KNNHeap knns, DBIDArrayIter iter, double maxdist) Perform a kNN search on the kd-tree.
private void	MinimalisticMemoryKDTree.KDTreeRangeQuery.kdRangeSearch(int left, int right, int axis, O query, ModifiableDoubleDBIDList res, DBIDArrayIter iter, double radius) Perform a kNN search on the kd-tree.

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.math.dimensionsimilarity

Methods in de.lmu.ifi.dbs.elki.math.dimensionsimilarity with parameters of type DBIDArrayIter

Modifier and Type	Method and Description
private void	MCEDimensionSimilarity.divide(DBIDArrayIter it, double[] data, ArrayList<DBIDs> idx, int start, int end, int depth, Mean mean) Recursive call to further subdivide the array.

Uses of DBIDArrayIter in de.lmu.ifi.dbs.elki.utilities.datastructures

Methods in de.lmu.ifi.dbs.elki.utilities.datastructures with parameters of type DBIDArrayIter

Modifier and Type	Method and Description
private static void	QuickSelect.insertionSort(ArrayModifiableDBIDs data, Comparator<? super DBIDRef> comparator, int start, int end, DBIDArrayIter iter1, DBIDArrayIter iter2) Sort a small array using repetitive insertion sort.