Serialized Form

Package de.lmu.ifi.dbs.elki.algorithm

Class de.lmu.ifi.dbs.elki.algorithm.AbortException extends RuntimeException implements Serializable

serialVersionUID: -1128409354869276998L

Package de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.cash

Class de.lmu.ifi.dbs.elki.algorithm.clustering.correlation.cash.CASHInterval extends HyperBoundingBox implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays. The readExternal method must read the values in the same sequence and with the same types as were written by writeExternal.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

The object implements the writeExternal method to save its contents by calling the methods of DataOutput for its primitive values or calling the writeObject method of ObjectOutput for objects, strings, and arrays.

Serial Data:

Overriding methods should use this tag to describe the data layout of this Externalizable object. List the sequence of element types and, if possible, relate the element to a public/protected field and/or method of this Externalizable class.

Throws:

IOException - Includes any I/O exceptions that may occur

Package de.lmu.ifi.dbs.elki.data

Class de.lmu.ifi.dbs.elki.data.Bit extends Number implements Serializable

serialVersionUID: 390879869314931240L

Serialized Fields

bit

boolean bit

Internal representation of the bit value.

Class de.lmu.ifi.dbs.elki.data.RationalNumber extends Number implements Serializable

serialVersionUID: 7347098153261459646L

Serialized Fields

numerator

BigInteger numerator

Holding the numerator of the RationalNumber.

denominator

BigInteger denominator

Holding the denominator of the RationalNumber.

Package de.lmu.ifi.dbs.elki.database

Class de.lmu.ifi.dbs.elki.database.DatabaseEvent extends EventObject implements Serializable

serialVersionUID: 1L

Serialized Fields

objectIDs

List<E> objectIDs

The ids of the database object that have been changed, i.e. updated, inserted or deleted.

Package de.lmu.ifi.dbs.elki.distance

Class de.lmu.ifi.dbs.elki.distance.AbstractDistance extends Object implements Serializable

Serialization Methods

readExternal

public void readExternal(ObjectInput arg0)
                  throws IOException,
                         ClassNotFoundException

Throws:

IOException

ClassNotFoundException

writeExternal

public void writeExternal(ObjectOutput arg0)
                   throws IOException

Throws:

IOException

Class de.lmu.ifi.dbs.elki.distance.BitDistance extends NumberDistance<BitDistance,Bit> implements Serializable

serialVersionUID: 6514853467081717551L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

Reads the bit value of this BitDistance from the specified stream.

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Writes the bit value of this BitDistance to the specified stream.

Throws:

IOException

Class de.lmu.ifi.dbs.elki.distance.CorrelationDistance extends AbstractDistance<D extends CorrelationDistance<D>> implements Serializable

serialVersionUID: 2829135841596857929L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

Reads the correlation value and the euclidean value of this CorrelationDistance from the specified stream.

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Writes the correlation value and the euclidean value of this CorrelationDistance to the specified stream.

Throws:

IOException

Class de.lmu.ifi.dbs.elki.distance.DoubleDistance extends NumberDistance<DoubleDistance,Double> implements Serializable

serialVersionUID: 3711413449321214862L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

Reads the double value of this DoubleDistance from the specified stream.

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Writes the double value of this DoubleDistance to the specified stream.

Throws:

IOException

Class de.lmu.ifi.dbs.elki.distance.FloatDistance extends NumberDistance<FloatDistance,Float> implements Serializable

serialVersionUID: -5702250266358369075L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

Reads the float value of this FloatDistance from the specified stream.

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Writes the float value of this FloatDistance to the specified stream.

Throws:

IOException

Class de.lmu.ifi.dbs.elki.distance.IntegerDistance extends NumberDistance<IntegerDistance,Integer> implements Serializable

serialVersionUID: 5583821082931825810L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

Reads the integer value of this IntegerDistance from the specified stream.

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Writes the integer value of this IntegerDistance to the specified stream.

Throws:

IOException

Class de.lmu.ifi.dbs.elki.distance.NumberDistance extends AbstractDistance<D extends NumberDistance<D,N>> implements Serializable

Serialization Methods

readExternal

public void readExternal(ObjectInput arg0)
                  throws IOException,
                         ClassNotFoundException

Throws:

IOException

ClassNotFoundException

writeExternal

public void writeExternal(ObjectOutput arg0)
                   throws IOException

Throws:

IOException

Class de.lmu.ifi.dbs.elki.distance.PreferenceVectorBasedCorrelationDistance extends CorrelationDistance<PreferenceVectorBasedCorrelationDistance> implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

Calls CorrelationDistance.readExternal(java.io.ObjectInput) and reads additionally the dimensionality and each Byte of the common preference vector from the specified stream..

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls CorrelationDistance.writeExternal(java.io.ObjectOutput) and writes additionally the dimensionality and each Byte of the common preference vector to the specified stream.

Throws:

IOException

Class de.lmu.ifi.dbs.elki.distance.SubspaceDistance extends AbstractDistance<SubspaceDistance> implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

Reads the subspace distance value and the affine distance value of this SubspaceDistance from the specified stream.

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Writes the subspace distance value and the affine distance value of this SubspaceDistance to the specified stream.

Throws:

IOException

Package de.lmu.ifi.dbs.elki.distance.distancefunction

Class de.lmu.ifi.dbs.elki.distance.distancefunction.PCACorrelationDistance extends CorrelationDistance<PCACorrelationDistance> implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

Reads the correlation value and the euclidean value of this CorrelationDistance from the specified stream.

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Writes the correlation value and the euclidean value of this CorrelationDistance to the specified stream.

Throws:

IOException

Package de.lmu.ifi.dbs.elki.gui.minigui

Class de.lmu.ifi.dbs.elki.gui.minigui.MiniGUI extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

logger

Logging logger

ELKI logger for the GUI

outputArea

LogPanel outputArea

Logging output area.

parameterTable

ParameterTable parameterTable

The parameter table

parameters

DynamicParameters parameters

Parameter storage

store

SavedSettingsFile store

Settings storage

savedCombo

JComboBox savedCombo

Combo box for saved settings

savedSettingsModel

MiniGUI.SettingsComboboxModel savedSettingsModel

Model to link the combobox with

runButton

JButton runButton

The "run" button.

Package de.lmu.ifi.dbs.elki.gui.util

Class de.lmu.ifi.dbs.elki.gui.util.LogPane extends JTextPane implements Serializable

serialVersionUID: 1L

Serialized Fields

baseStyle

Style baseStyle

Base (default) style

msgStyle

Style msgStyle

Regular message style

dbgStyle

Style dbgStyle

Debug message style

errStyle

Style errStyle

Error message style

msgformat

Formatter msgformat

Formatter for regular messages (informational records)

debugformat

Formatter debugformat

Formatter for debugging messages

errformat

Formatter errformat

Formatter for error messages

lastNewlinePos

int lastNewlinePos

Last newline position

Class de.lmu.ifi.dbs.elki.gui.util.LogPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

logpane

LogPane logpane

The actual text logging pane

pbarmap

HashMap<K,V> pbarmap

Current progress bars

Class de.lmu.ifi.dbs.elki.gui.util.ParametersModel extends AbstractTableModel implements Serializable

serialVersionUID: 1L

Serialized Fields

parameters

DynamicParameters parameters

Parameter storage

Class de.lmu.ifi.dbs.elki.gui.util.ParameterTable extends JTable implements Serializable

serialVersionUID: 1L

Serialized Fields

parameters

DynamicParameters parameters

The parameters we edit.

Package de.lmu.ifi.dbs.elki.index.tree

Class de.lmu.ifi.dbs.elki.index.tree.AbstractEntry extends Object implements Serializable

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Restores the id of the object (node or data object) that is represented by this entry from the specified stream.

Throws:

ClassNotFoundException - If the class for an object being restored cannot be found.

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Writes the id of the object (node or data object) that is represented by this entry to the specified stream.

Throws:

IOException

Class de.lmu.ifi.dbs.elki.index.tree.AbstractNode extends AbstractPage<N extends AbstractNode<N,E>> implements Serializable

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Reads the id of this node, the numEntries and the entries array from the specified stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the id of this node, the numEntries and the entries array to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Package de.lmu.ifi.dbs.elki.index.tree.metrical

Package de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants

Class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.AbstractMTreeNode extends AbstractNode<N extends AbstractMTreeNode<O,D,N,E>,E extends MTreeEntry<D>> implements Serializable

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Reads the id of this node, the numEntries and the entries array from the specified stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the id of this node, the numEntries and the entries array to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.MTreeDirectoryEntry extends AbstractEntry implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Calls the super method and reads the routingObjectID, the parentDistance and the coveringRadius of this entry from the specified input stream.

Throws:

ClassNotFoundException - If the class for an object being restored cannot be found.

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the routingObjectID, the parentDistance and the coveringRadius of this entry to the specified stream.

Throws:

IOException

Class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.MTreeLeafEntry extends AbstractEntry implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Calls the super method and reads the parentDistance of this entry from the specified input stream.

Throws:

ClassNotFoundException - If the class for an object being restored cannot be found.

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the parentDistance of this entry to the specified stream.

Throws:

IOException

Package de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp

Class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkapp.PolynomialApproximation extends Object implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays. The readExternal method must read the values in the same sequence and with the same types as were written by writeExternal.

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

The object implements the writeExternal method to save its contents by calling the methods of DataOutput for its primitive values or calling the writeObject method of ObjectOutput for objects, strings, and arrays.

Throws:

IOException

Package de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop

Class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mktrees.mkcop.ApproximationLine extends Object implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays. The readExternal method must read the values in the same sequence and with the same types as were written by writeExternal.

Throws:

IOException

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

The object implements the writeExternal method to save its contents by calling the methods of DataOutput for its primitive values or calling the writeObject method of ObjectOutput for objects, strings, and arrays.

Throws:

IOException

Package de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree

Class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.mtree.MTreeNode extends AbstractMTreeNode<O extends DatabaseObject,D extends Distance<D>,MTreeNode<O extends DatabaseObject,D extends Distance<D>>,MTreeEntry<D extends Distance<D>>> implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Reads the id of this node, the numEntries and the entries array from the specified stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the id of this node, the numEntries and the entries array to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Package de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.util

Class de.lmu.ifi.dbs.elki.index.tree.metrical.mtreevariants.util.PQNode extends DefaultHeapNode<D extends Distance<D>,Identifiable> implements Serializable

serialVersionUID: -671978541634018004L

Serialized Fields

routingObjectID

Integer routingObjectID

The id of the routing object.

Package de.lmu.ifi.dbs.elki.index.tree.spatial

Class de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialDirectoryEntry extends AbstractEntry implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Calls the super method and reads the MBR object of this entry from the specified input stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the MBR object of this entry to the specified output stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Class de.lmu.ifi.dbs.elki.index.tree.spatial.SpatialLeafEntry extends AbstractEntry implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Calls the super method and reads the values of this entry from the specified input stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the values of this entry to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Package de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants

Class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.AbstractRStarTreeNode extends AbstractNode<N extends AbstractRStarTreeNode<N,E>,E extends SpatialEntry> implements Serializable

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Reads the id of this node, the numEntries and the entries array from the specified stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the id of this node, the numEntries and the entries array to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Package de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu

Class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu.DeLiCluDirectoryEntry extends SpatialDirectoryEntry implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Calls the super method and reads the MBR object of this entry from the specified input stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the MBR object of this entry to the specified output stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu.DeLiCluLeafEntry extends SpatialLeafEntry implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Calls the super method and reads the values of this entry from the specified input stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the values of this entry to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.deliclu.DeLiCluNode extends AbstractRStarTreeNode<DeLiCluNode,DeLiCluEntry> implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Reads the id of this node, the numEntries and the entries array from the specified stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the id of this node, the numEntries and the entries array to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Package de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn

Class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNDirectoryEntry extends SpatialDirectoryEntry implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Calls the super method and reads the knn distance of this entry from the specified input stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the knn distance of this entry to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNLeafEntry extends SpatialLeafEntry implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Calls the super method and reads the knn distance of this entry from the specified input stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the knn distance of this entry to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rdknn.RdKNNNode extends AbstractRStarTreeNode<RdKNNNode<D extends NumberDistance<D,N>,N extends Number>,RdKNNEntry<D extends NumberDistance<D,N>,N extends Number>> implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Reads the id of this node, the numEntries and the entries array from the specified stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the id of this node, the numEntries and the entries array to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Package de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar

Class de.lmu.ifi.dbs.elki.index.tree.spatial.rstarvariants.rstar.RStarTreeNode extends AbstractRStarTreeNode<RStarTreeNode,SpatialEntry> implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

Reads the id of this node, the numEntries and the entries array from the specified stream.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

Calls the super method and writes the id of this node, the numEntries and the entries array to the specified stream.

Throws:

IOException - Includes any I/O exceptions that may occur

Package de.lmu.ifi.dbs.elki.logging

Class de.lmu.ifi.dbs.elki.logging.ELKILogRecord extends LogRecord implements Serializable

serialVersionUID: 2820476270420700176L

Package de.lmu.ifi.dbs.elki.logging.progress

Class de.lmu.ifi.dbs.elki.logging.progress.ProgressLogRecord extends ELKILogRecord implements Serializable

serialVersionUID: 1L

Serialized Fields

progress

Progress progress

Progress storage

Package de.lmu.ifi.dbs.elki.math.linearalgebra

Class de.lmu.ifi.dbs.elki.math.linearalgebra.CholeskyDecomposition extends Object implements Serializable

Serialized Fields

L

double[][] L

Array for internal storage of decomposition.

internal array storage.

n

int n

Row and column dimension (square matrix).

matrix dimension.

isspd

boolean isspd

Symmetric and positive definite flag.

is symmetric and positive definite flag.

Class de.lmu.ifi.dbs.elki.math.linearalgebra.EigenvalueDecomposition extends Object implements Serializable

serialVersionUID: 1L

Serialized Fields

n

int n

Row and column dimension (square matrix).

matrix dimension.

issymmetric

boolean issymmetric

Symmetry flag.

internal symmetry flag.

d

double[] d

Arrays for internal storage of eigenvalues.

internal storage of eigenvalues.

e

double[] e

Arrays for internal storage of eigenvalues.

internal storage of eigenvalues.

V

double[][] V

Array for internal storage of eigenvectors.

internal storage of eigenvectors.

H

double[][] H

Array for internal storage of nonsymmetric Hessenberg form.

internal storage of nonsymmetric Hessenberg form.

ort

double[] ort

Working storage for nonsymmetric algorithm.

working storage for nonsymmetric algorithm.

Class de.lmu.ifi.dbs.elki.math.linearalgebra.LUDecomposition extends Object implements Serializable

serialVersionUID: 1L

Serialized Fields

LU

double[][] LU

Array for internal storage of decomposition.

internal array storage.

m

int m

Row and column dimensions, and pivot sign.

column dimension.

n

int n

Row and column dimensions, and pivot sign.

column dimension.

pivsign

int pivsign

Row and column dimensions, and pivot sign.

column dimension.

piv

int[] piv

Internal storage of pivot vector.

pivot vector.

Class de.lmu.ifi.dbs.elki.math.linearalgebra.Matrix extends Object implements Serializable

serialVersionUID: -8331523628259600919L

Serialized Fields

elements

double[][] elements

Array for internal storage of elements.

internal array storage.

rowdimension

int rowdimension

Row dimension.

columndimension

int columndimension

Column dimension.

Class de.lmu.ifi.dbs.elki.math.linearalgebra.QRDecomposition extends Object implements Serializable

serialVersionUID: 1L

Serialized Fields

QR

double[][] QR

Array for internal storage of decomposition.

internal array storage.

m

int m

Row and column dimensions.

column dimension.

n

int n

Row and column dimensions.

column dimension.

Rdiag

double[] Rdiag

Array for internal storage of diagonal of R.

diagonal of R.

Class de.lmu.ifi.dbs.elki.math.linearalgebra.SingularValueDecomposition extends Object implements Serializable

Serialized Fields

U

double[][] U

Arrays for internal storage of U and V.

internal storage of U.

V

double[][] V

Arrays for internal storage of U and V.

internal storage of U.

s

double[] s

Array for internal storage of singular values.

internal storage of singular values.

m

int m

Row and column dimensions.

row dimension.

n

int n

Row and column dimensions.

row dimension.

Class de.lmu.ifi.dbs.elki.math.linearalgebra.Vector extends Matrix implements Serializable

serialVersionUID: 1L

Package de.lmu.ifi.dbs.elki.normalization

Class de.lmu.ifi.dbs.elki.normalization.NonNumericFeaturesException extends Exception implements Serializable

serialVersionUID: 284302959521511627L

Package de.lmu.ifi.dbs.elki.persistent

Class de.lmu.ifi.dbs.elki.persistent.AbstractPage extends Object implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays. The readExternal method must read the values in the same sequence and with the same types as were written by writeExternal.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

The object implements the writeExternal method to save its contents by calling the methods of DataOutput for its primitive values or calling the writeObject method of ObjectOutput for objects, strings, and arrays.

Serial Data:

Overriding methods should use this tag to describe the data layout of this Externalizable object. List the sequence of element types and, if possible, relate the element to a public/protected field and/or method of this Externalizable class.

Throws:

IOException - Includes any I/O exceptions that may occur

Class de.lmu.ifi.dbs.elki.persistent.OnDiskArray extends Object implements Serializable

serialVersionUID: 7586497243452875056L

Serialized Fields

magic

int magic

Magic number used to identify files

headersize

int headersize

Size of the header in the file. Note that the internal header is four integers already.

recordsize

int recordsize

Size of the records in the file.

numrecs

int numrecs

Number of records in the file.

filename

File filename

File name.

file

RandomAccessFile file

Random Access File object.

lock

FileLock lock

Lock for the file that will be kept while writing.

writable

boolean writable

Writable or read-only object

Package de.lmu.ifi.dbs.elki.utilities

Class de.lmu.ifi.dbs.elki.utilities.AnyMap extends HashMap<K,Object> implements Serializable

serialVersionUID: 1L

Class de.lmu.ifi.dbs.elki.utilities.HashMapList extends HashMap<K,List<V>> implements Serializable

serialVersionUID: 3883242025598456055L

Class de.lmu.ifi.dbs.elki.utilities.HyperBoundingBox extends Object implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays. The readExternal method must read the values in the same sequence and with the same types as were written by writeExternal.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

The object implements the writeExternal method to save its contents by calling the methods of DataOutput for its primitive values or calling the writeObject method of ObjectOutput for objects, strings, and arrays.

Serial Data:

Overriding methods should use this tag to describe the data layout of this Externalizable object. List the sequence of element types and, if possible, relate the element to a public/protected field and/or method of this Externalizable class.

Throws:

IOException - Includes any I/O exceptions that may occur

Class de.lmu.ifi.dbs.elki.utilities.ModifiableHyperBoundingBox extends HyperBoundingBox implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException,
                         ClassNotFoundException

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays. The readExternal method must read the values in the same sequence and with the same types as were written by writeExternal.

Throws:

IOException - if I/O errors occur

ClassNotFoundException - If the class for an object being restored cannot be found.

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

The object implements the writeExternal method to save its contents by calling the methods of DataOutput for its primitive values or calling the writeObject method of ObjectOutput for objects, strings, and arrays.

Serial Data:

Overriding methods should use this tag to describe the data layout of this Externalizable object. List the sequence of element types and, if possible, relate the element to a public/protected field and/or method of this Externalizable class.

Throws:

IOException - Includes any I/O exceptions that may occur

Class de.lmu.ifi.dbs.elki.utilities.UnableToComplyException extends Exception implements Serializable

Package de.lmu.ifi.dbs.elki.utilities.heap

Class de.lmu.ifi.dbs.elki.utilities.heap.DefaultHeap extends Object implements Serializable

serialVersionUID: 499701873654975438L

Serialized Fields

heap

Vector<E> heap

Contains all elements of the heap.

indices

Hashtable<K,V> indices

Holds the indices in the heap of each element.

ascending

boolean ascending

Indicates weather this heap is organized in ascending or descending order.

Class de.lmu.ifi.dbs.elki.utilities.heap.DefaultHeapNode extends Pair<K extends Comparable<K>,V extends Identifiable> implements Serializable

Class de.lmu.ifi.dbs.elki.utilities.heap.DefaultIdentifiable extends Object implements Serializable

serialVersionUID: 1L

Serialization Methods

readExternal

public void readExternal(ObjectInput in)
                  throws IOException

The object implements the readExternal method to restore its contents by calling the methods of DataInput for primitive types and readObject for objects, strings and arrays. The readExternal method must read the values in the same sequence and with the same types as were written by writeExternal.

Throws:

IOException - on read errors

writeExternal

public void writeExternal(ObjectOutput out)
                   throws IOException

The object implements the writeExternal method to save its contents by calling the methods of DataOutput for its primitive values or calling the writeObject method of ObjectOutput for objects, strings, and arrays.

Throws:

IOException - on write errors

Class de.lmu.ifi.dbs.elki.utilities.heap.MinMaxHeap extends Object implements Serializable

serialVersionUID: 7075663809362359575L

Serialized Fields

heap

Vector<E> heap

Contains all elements of the heap.

indices

Hashtable<K,V> indices

Holds the indices in the heap of each element.

Class de.lmu.ifi.dbs.elki.utilities.heap.PersistentHeap extends Object implements Serializable

serialVersionUID: -8099124402895872945L

Serialized Fields

file

PageFile<P extends Page<P>> file

The file storing the elements of this heap.

pageSize

int pageSize

The size of a page (deap) in Bytes.

numElements

int numElements

The number of elements in this heap.

maxCacheSize

int maxCacheSize

The maximum number of deaps in the cache, corresponds to the maximum height of this heap.

maxDeapIndex

int maxDeapIndex

The maximum index of a deap in this heap (corresponds to the maximum number of deaps - 1)

maxDeapSize

int maxDeapSize

The maximum size of a deap.

height

int height

The actual height of this heap.

numDeaps

int numDeaps

The actual number of Deaps in this heap.

cachePath

Deap<K extends Comparable<K> & Serializable,V extends Identifiable & Serializable>[] cachePath

The actual path of this heap in main memory. This array consists of one path from root to the last leaf.

Package de.lmu.ifi.dbs.elki.utilities.optionhandling

Class de.lmu.ifi.dbs.elki.utilities.optionhandling.InternalParameterizationErrors extends ParameterException implements Serializable

serialVersionUID: 1L

Serialized Fields

internalErrors

Collection<E> internalErrors

The errors that occurred.

Class de.lmu.ifi.dbs.elki.utilities.optionhandling.NoParameterValueException extends ParameterException implements Serializable

serialVersionUID: 8991076624591950629L

Class de.lmu.ifi.dbs.elki.utilities.optionhandling.ParameterException extends Exception implements Serializable

Class de.lmu.ifi.dbs.elki.utilities.optionhandling.UnspecifiedParameterException extends WrongParameterValueException implements Serializable

serialVersionUID: -7142809547201980898L

Class de.lmu.ifi.dbs.elki.utilities.optionhandling.UnusedParameterException extends ParameterException implements Serializable

Class de.lmu.ifi.dbs.elki.utilities.optionhandling.WrongParameterValueException extends ParameterException implements Serializable

serialVersionUID: 2155964376772417402L

Package de.lmu.ifi.dbs.elki.visualization.batikutil

Class de.lmu.ifi.dbs.elki.visualization.batikutil.JSVGSynchronizedCanvas extends org.apache.batik.swing.JSVGCanvas implements Serializable

serialVersionUID: 1L

Serialized Fields

synchronizer

JSVGUpdateSynchronizer synchronizer

Synchronizer to use when synchronizing SVG plots

plot

SVGPlot plot

Current SVG plot.

Package de.lmu.ifi.dbs.elki.visualization.css

Class de.lmu.ifi.dbs.elki.visualization.css.CSSClass.InvalidCSS extends RuntimeException implements Serializable

serialVersionUID: 3130536799704124363L

Class de.lmu.ifi.dbs.elki.visualization.css.CSSClassManager.CSSNamingConflict extends Exception implements Serializable

serialVersionUID: 4163822727195636747L

Package de.lmu.ifi.dbs.elki.visualization.gui

Class de.lmu.ifi.dbs.elki.visualization.gui.ResultWindow extends JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

overviewItem

JMenuItem overviewItem

The "Overview" button, which goes to the overview view.

quitItem

JMenuItem quitItem

The "Quit" button, to close the application.

exportItem

JMenuItem exportItem

The "Export" button, to save the image

visualizersMenu

JMenu visualizersMenu

The "Visualizers" button, to enable/disable visualizers

svgCanvas

JSVGSynchronizedCanvas svgCanvas

The SVG canvas.

overview

OverviewPlot<NV extends NumberVector<NV,?>> overview

The overview plot.

visualizers

ArrayList<E> visualizers

Visualizers

currentSubplot

SubplotSelectedEvent currentSubplot

Currently selected subplot.

Package de.lmu.ifi.dbs.elki.visualization.gui.overview

Class de.lmu.ifi.dbs.elki.visualization.gui.overview.SubplotSelectedEvent extends ActionEvent implements Serializable

serialVersionUID: 1L

Serialized Fields

overview

OverviewPlot<NV extends NumberVector<NV,?>> overview

Parent overview plot.

x

double x

X Coodinate

y

double y

X Coodinate

Package de.lmu.ifi.dbs.elki.visualization.savedialog

Class de.lmu.ifi.dbs.elki.visualization.savedialog.SaveOptionsPanel extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

fc

JFileChooser fc

The fileChooser on which this panel is installed.

width

int width

The width of the exported image (if exported to JPEG or PNG). Default is 1024.

height

int height

The height of the exported image (if exported to JPEG or PNG). Default is 768.

ratio

double ratio

Ratio for easier size adjustment

mainPanel

JPanel mainPanel

Main panel

qualPanel

JPanel qualPanel

Shows quality info when saving as JPEG.

sizePanel

JPanel sizePanel

If saving as JPEG/PNG show width/height infos here.

spinnerWidth

JSpinner spinnerWidth

spinnerHeight

JSpinner spinnerHeight

spinnerQual

JSpinner spinnerQual

modelWidth

SpinnerNumberModel modelWidth

modelHeight

SpinnerNumberModel modelHeight

modelQuality

SpinnerNumberModel modelQuality

aspectRatioLock

JCheckBox aspectRatioLock

resetSizeButton

JButton resetSizeButton

formatSelector

JComboBox formatSelector

hasResetButton

boolean hasResetButton

Package de.lmu.ifi.dbs.elki.visualization.visualizers

Class de.lmu.ifi.dbs.elki.visualization.visualizers.VisualizerContext extends AnyMap<String> implements Serializable

serialVersionUID: 1L

Serialized Fields

database

Database<O extends DatabaseObject> database

The database

result

Result result

The full result object